Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s51.

Sample reads: 133,412. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 8773.86 65765.08
2. krt4 ENSDARG00000017624, ENSDARG00000115790 5362.52 40195.15 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 3003.52 22513.10 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. mylz3 ENSDARG00000017441 2203.86 16519.19 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
5. ckma ENSDARG00000035327, ENSDARG00000114671 1947.97 14601.15 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
6. ckmb ENSDARG00000040565 1828.02 13702.05 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
7. mt-nd2 ENSDARG00000063899 1808.83 13558.21 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
8. actc1b ENSDARG00000099197 1474.57 11052.74 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
9. mt-co2 ENSDARG00000063908 1439.39 10789.05 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
10. tmsb4x ENSDARG00000077777 1372.22 10285.57 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
11. mt-nd4 ENSDARG00000063917 1333.83 9997.82 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
12. actb2 ENSDARG00000037870 1324.24 9925.93 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
13. atp2a1 ENSDARG00000020574 1316.24 9865.97 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
14. mt-atp6 ENSDARG00000063911 1268.26 9506.33 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
15. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1268.26 9506.33 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
16. mt-co3 ENSDARG00000063912 1154.71 8655.21 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
17. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 970.79 7276.62 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
18. tnnc2 ENSDARG00000070835, ENSDARG00000111155 967.59 7252.64 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
19. myhz2 ENSDARG00000012944 934.00 7000.86 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
20. col1a1a ENSDARG00000012405, ENSDARG00000116113 825.25 6185.72 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
21. mt-nd1 ENSDARG00000063895 732.49 5490.43 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
22. mt-cyb ENSDARG00000063924 726.09 5442.46 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
23. tnnt3a ENSDARG00000030270 694.10 5202.68 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
24. actb1 ENSDARG00000037746, ENSDARG00000113649 674.91 5058.84 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
25. acta1b ENSDARG00000055618 665.32 4986.95 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
26. acta1a ENSDARG00000036371 641.33 4807.13 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
27. pvalb1 ENSDARG00000037789 638.13 4783.15 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
28. eef1a1l1 ENSDARG00000020850 585.35 4387.53 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
29. tnni2a.4 ENSDARG00000029069 577.35 4327.57 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
30. ppiaa ENSDARG00000009212 562.96 4219.71 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
31. si:dkey-151g10.6 si:dkey-151g10.6 542.17 4063.87
32. zgc:66286 zgc:66286 508.58 3812.10
33. myhz1.3 ENSDARG00000067997 503.79 3776.19 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
34. hmga1a ENSDARG00000028335 443.01 3320.61 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
35. zgc:112425 zgc:112425 417.42 3128.80
36. ttna ttna 412.62 3092.82
37. eef2b ENSDARG00000100371, ENSDARG00000109247 399.83 2996.95 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
38. myl1 ENSDARG00000014196 399.83 2996.95 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
39. zgc:92533 zgc:92533 379.04 2841.12
40. tnnt3b ENSDARG00000068457 372.64 2793.15 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
41. col1a1b ENSDARG00000035809 358.25 2685.29 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
42. si:ch211-226o13.2 340.65 2553.37 si:ch211-226o13.2
43. cfl1l ENSDARG00000012972 335.86 2517.46 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
44. ptmab ENSDARG00000101766 327.86 2457.50 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
45. mt-co1 ENSDARG00000063905 326.26 2445.50 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
46. tpm3 ENSDARG00000005162 324.66 2433.51 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
47. myl10 ENSDARG00000062592 318.26 2385.54 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
48. hspa8 ENSDARG00000068992, ENSDARG00000114726 315.07 2361.63 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
49. cyt1l ENSDARG00000036832 297.47 2229.71 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
50. rpl8 ENSDARG00000014867 297.47 2229.71 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
51. btf3 ENSDARG00000035400, ENSDARG00000116462 294.27 2205.72 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
52. rpl23 ENSDARG00000053457 291.08 2181.81 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
53. ttnb ttnb 286.28 2145.83
54. rpl21 ENSDARG00000010516, ENSDARG00000110263 278.28 2085.87 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
55. rpl18a ENSDARG00000025073 262.29 1966.01 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
56. rpl10a ENSDARG00000042905, ENSDARG00000115649 260.69 1954.02 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
57. mylpfb ENSDARG00000002589 257.49 1930.03 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
58. rps27a ENSDARG00000032725, ENSDARG00000114059 255.89 1918.04 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
59. icn ENSDARG00000009978 249.49 1870.07 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
60. rpl9 ENSDARG00000037350, ENSDARG00000112384 241.50 1810.18 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
61. rplp1 ENSDARG00000021864 239.90 1798.19 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
62. aldoab ENSDARG00000034470 236.70 1774.20 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
63. rps23 ENSDARG00000021838 233.50 1750.22 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
64. rpl36a ENSDARG00000058105, ENSDARG00000112656 228.70 1714.24 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
65. rps26l ENSDARG00000030408 228.70 1714.24 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
66. gch2 ENSDARG00000099101 217.51 1630.36 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
67. ATP5B 215.91 1618.37 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
68. krt8 ENSDARG00000058358, ENSDARG00000109279 214.31 1606.38 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
69. pvalb4 ENSDARG00000024433 214.31 1606.38 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
70. rpl11 ENSDARG00000043509 214.31 1606.38 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
71. col1a2 ENSDARG00000020007 212.71 1594.38 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
72. pabpc1a ENSDARG00000017219 212.71 1594.38 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
73. rpl27 ENSDARG00000015128 212.71 1594.38 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
74. id1 ENSDARG00000040764 211.11 1582.39 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
75. fkbp1aa ENSDARG00000022684 209.51 1570.40 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
76. rps14 ENSDARG00000036629 206.31 1546.41 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
77. atp5g3b 204.71 1534.42 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
78. mt-nd3 ENSDARG00000063914 204.71 1534.42 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
79. rpl26 ENSDARG00000102317 204.71 1534.42 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
80. gapdh ENSDARG00000043457 199.91 1498.44 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
81. rpsa ENSDARG00000019181 196.72 1474.53 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
82. smyhc1 ENSDARG00000099959, ENSDARG00000115916 196.72 1474.53 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
83. hbae3 ENSDARG00000079305 195.12 1462.54 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
84. rpl19 ENSDARG00000013307 193.52 1450.54 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
85. rpl36 ENSDARG00000100588 191.92 1438.55 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
86. rps2 ENSDARG00000077291 188.72 1414.56 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
87. eif5a ENSDARG00000017235 187.12 1402.57 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
88. rps20 ENSDARG00000036044 185.52 1390.58 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
89. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 177.52 1330.61 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
90. rps4x ENSDARG00000014690 174.33 1306.70 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
91. hbbe1.1 ENSDARG00000113599 171.13 1282.72 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
92. RPL29 ENSDARG00000077717 169.53 1270.72 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
93. rpl5b ENSDARG00000015862, ENSDARG00000109661 169.53 1270.72 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
94. col2a1a ENSDARG00000069093, ENSDARG00000111202 167.93 1258.73 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
95. rps27.1 ENSDARG00000023298 167.93 1258.73 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
96. col11a1a ENSDARG00000026165, ENSDARG00000115341 166.33 1246.74 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
97. tpm2 ENSDARG00000104682 166.33 1246.74 tropomyosin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040625-114]
98. AL954137.2 ENSDARG00000114408 164.73 1234.75
99. pfn1 ENSDARG00000088091 164.73 1234.75 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
100. tmem38a ENSDARG00000024047 164.73 1234.75 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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