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Experiment Zebrafish_40hpf_whole_embryo2, section s50.

Sample reads: 133,410. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 8312.81 62310.15
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4288.89 32148.14 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 3672.40 27527.13 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckma ENSDARG00000035327, ENSDARG00000114671 2494.20 18695.72 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
5. mylz3 ENSDARG00000017441 2248.66 16855.23 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
6. ckmb ENSDARG00000040565 2229.23 16709.59 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
7. actc1b ENSDARG00000099197 2165.64 16232.94 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
8. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2031.39 15226.65 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
9. mt-nd2 ENSDARG00000063899 1785.86 13386.23 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
10. mt-co2 ENSDARG00000063908 1671.04 12525.58 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
11. atp2a1 ENSDARG00000020574 1462.60 10963.18 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
12. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1363.68 10221.71 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
13. mt-nd4 ENSDARG00000063917 1361.92 10208.51 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
14. mt-atp6 ENSDARG00000063911 1354.85 10155.52 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
15. myhz2 ENSDARG00000012944 1294.79 9705.33 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
16. tmsb4x ENSDARG00000077777 1199.40 8990.32 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
17. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1132.28 8487.21 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
18. mt-co3 ENSDARG00000063912 1123.45 8421.02 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. actb2 ENSDARG00000037870 1063.39 7970.83 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
20. acta1b ENSDARG00000055618 1045.73 7838.46 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
21. tnni2a.4 ENSDARG00000029069 957.40 7176.36 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
22. mt-nd1 ENSDARG00000063895 869.08 6514.34 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
23. acta1a ENSDARG00000036371 740.13 5547.78 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
24. eef1a1l1 ENSDARG00000020850 717.17 5375.68 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
25. tnnt3a ENSDARG00000030270 710.10 5322.68 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
26. si:dkey-151g10.6 si:dkey-151g10.6 685.37 5137.31
27. mt-cyb ENSDARG00000063924 630.61 4726.85 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
28. col1a1a ENSDARG00000012405, ENSDARG00000116113 625.32 4687.20 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
29. pvalb1 ENSDARG00000037789 605.88 4541.48 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
30. tnnt3b ENSDARG00000068457 602.35 4515.02 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
31. myhz1.3 ENSDARG00000067997 593.52 4448.83 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
32. actb1 ENSDARG00000037746, ENSDARG00000113649 567.02 4250.20 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
33. ppiaa ENSDARG00000009212 529.93 3972.18 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
34. zgc:66286 zgc:66286 489.30 3667.64
35. myl1 ENSDARG00000014196 468.10 3508.73 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
36. hmga1a ENSDARG00000028335 418.64 3137.99 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
37. ttna ttna 390.38 2926.16
38. rpl10a ENSDARG00000042905, ENSDARG00000115649 383.31 2873.17 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
39. eef2b ENSDARG00000100371, ENSDARG00000109247 372.72 2793.79 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
40. mylpfb ENSDARG00000002589 370.95 2780.52 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
41. rpl23 ENSDARG00000053457 367.42 2754.06 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
42. rps26l ENSDARG00000030408 365.65 2740.79 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
43. zgc:92533 zgc:92533 362.12 2714.33
44. myl10 ENSDARG00000062592 349.75 2621.61 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
45. col1a1b ENSDARG00000035809 337.39 2528.97 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
46. rplp1 ENSDARG00000021864 335.62 2515.70 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
47. rpl8 ENSDARG00000014867 333.85 2502.43 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
48. hspa8 ENSDARG00000068992, ENSDARG00000114726 332.09 2489.24 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
49. tpm3 ENSDARG00000005162 330.32 2475.97 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
50. si:ch211-226o13.2 328.56 2462.78 si:ch211-226o13.2
51. btf3 ENSDARG00000035400, ENSDARG00000116462 325.02 2436.25 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
52. zgc:112425 zgc:112425 323.26 2423.05
53. aldoab ENSDARG00000034470 321.49 2409.79 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
54. rps23 ENSDARG00000021838 317.96 2383.33 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
55. ptmab ENSDARG00000101766 314.42 2356.79 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
56. cfl1l ENSDARG00000012972 309.12 2317.06 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
57. rpl18a ENSDARG00000025073 307.36 2303.87 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
58. rpl36a ENSDARG00000058105, ENSDARG00000112656 302.06 2264.14 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
59. rpl21 ENSDARG00000010516, ENSDARG00000110263 296.76 2224.42 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
60. gapdh ENSDARG00000043457 286.16 2144.96 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
61. rpl26 ENSDARG00000102317 284.39 2131.70 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
62. mt-co1 ENSDARG00000063905 275.56 2065.51 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
63. rpl11 ENSDARG00000043509 268.50 2012.59 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
64. rpl36 ENSDARG00000100588 268.50 2012.59 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
65. rps12 ENSDARG00000036875, ENSDARG00000115157 268.50 2012.59 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
66. cyt1l ENSDARG00000036832 266.73 1999.32 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
67. ttnb ttnb 261.43 1959.60
68. rpl9 ENSDARG00000037350, ENSDARG00000112384 254.37 1906.68 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
69. id1 ENSDARG00000040764 252.60 1893.41 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
70. pvalb4 ENSDARG00000024433 252.60 1893.41 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
71. rps20 ENSDARG00000036044 250.83 1880.14 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
72. rps2 ENSDARG00000077291 240.23 1800.69 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
73. fkbp1aa ENSDARG00000022684 238.47 1787.49 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
74. icn ENSDARG00000009978 236.70 1774.23 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
75. ATP5B 234.93 1760.96 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
76. eif5a ENSDARG00000017235 233.17 1747.77 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
77. nme2b.2 ENSDARG00000099420 233.17 1747.77 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
78. rpl19 ENSDARG00000013307 233.17 1747.77 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
79. rps14 ENSDARG00000036629 233.17 1747.77 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
80. col2a1a ENSDARG00000069093, ENSDARG00000111202 229.64 1721.31 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
81. mt-nd3 ENSDARG00000063914 227.87 1708.04 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
82. atp5g3b 224.34 1681.58 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
83. rpsa ENSDARG00000019181 220.80 1655.05 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
84. smyhc1 ENSDARG00000099959, ENSDARG00000115916 220.80 1655.05 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
85. fabp3 ENSDARG00000023290 219.04 1641.85 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
86. rpl27 ENSDARG00000015128 215.50 1615.32 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
87. rplp2l ENSDARG00000011201 213.74 1602.13 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
88. rplp2 ENSDARG00000101406 210.20 1575.59 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
89. rpl6 ENSDARG00000058451 208.44 1562.40 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
90. rps5 ENSDARG00000043453 206.67 1549.13 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
91. rpl15 ENSDARG00000009285 204.91 1535.94 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
92. rps27a ENSDARG00000032725, ENSDARG00000114059 204.91 1535.94 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
93. pfn1 ENSDARG00000088091 203.14 1522.67 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
94. col1a2 ENSDARG00000020007 199.61 1496.21 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
95. rpl18 ENSDARG00000029533 199.61 1496.21 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
96. rplp0 ENSDARG00000051783 199.61 1496.21 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
97. rpl5b ENSDARG00000015862, ENSDARG00000109661 197.84 1482.94 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
98. rps19 ENSDARG00000030602 197.84 1482.94 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
99. tpm2 ENSDARG00000104682 190.77 1429.95 tropomyosin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040625-114]
100. rps4x ENSDARG00000014690 185.47 1390.22 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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