Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s49.

Sample reads: 133,394. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 10870.65 81492.95
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4348.65 32600.10 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 3803.38 28512.43 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. actc1b ENSDARG00000099197 2277.77 17075.54 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
5. ckmb ENSDARG00000040565 2271.97 17032.06 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. mylz3 ENSDARG00000017441 2215.90 16611.72 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
7. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2202.36 16510.22 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
8. ckma ENSDARG00000035327, ENSDARG00000114671 2200.43 16495.75 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
9. mt-co2 ENSDARG00000063908 1610.68 12074.63 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
10. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1461.80 10958.53 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
11. mt-nd2 ENSDARG00000063899 1450.19 10871.50 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
12. mt-nd4 ENSDARG00000063917 1349.65 10117.79 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
13. mt-atp6 ENSDARG00000063911 1307.11 9798.88 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
14. tmsb4x ENSDARG00000077777 1303.24 9769.87 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
15. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1283.91 9624.96 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
16. atp2a1 ENSDARG00000020574 1258.77 9436.50 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
17. myhz2 ENSDARG00000012944 1164.02 8726.20 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
18. mt-co3 ENSDARG00000063912 1123.42 8421.83 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. acta1b ENSDARG00000055618 1059.61 7943.48 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
20. actb2 ENSDARG00000037870 922.32 6914.27 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
21. tnni2a.4 ENSDARG00000029069 912.66 6841.85 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
22. tnnt3a ENSDARG00000030270 804.37 6030.04 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
23. pvalb1 ENSDARG00000037789 788.91 5914.15 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
24. myhz1.3 ENSDARG00000067997 765.70 5740.15 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
25. eef1a1l1 ENSDARG00000020850 748.30 5609.71 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
26. si:dkey-151g10.6 si:dkey-151g10.6 699.96 5247.32
27. mt-nd1 ENSDARG00000063895 686.43 5145.89 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
28. acta1a ENSDARG00000036371 641.95 4812.44 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
29. mt-cyb ENSDARG00000063924 620.68 4652.99 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
30. tnnt3b ENSDARG00000068457 589.75 4421.12 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
31. col1a1a ENSDARG00000012405, ENSDARG00000116113 566.54 4247.13 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
32. actb1 ENSDARG00000037746, ENSDARG00000113649 504.67 3783.31 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
33. ppiaa ENSDARG00000009212 493.07 3696.35 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
34. myl1 ENSDARG00000014196 471.80 3536.90 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
35. zgc:66286 zgc:66286 448.59 3362.90
36. mylpfb ENSDARG00000002589 435.06 3261.47 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
37. rpl23 ENSDARG00000053457 413.79 3102.02 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
38. rpl10a ENSDARG00000042905, ENSDARG00000115649 390.59 2928.10 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
39. zgc:92533 zgc:92533 369.32 2768.65
40. btf3 ENSDARG00000035400, ENSDARG00000116462 355.78 2667.14 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
41. eef2b ENSDARG00000100371, ENSDARG00000109247 348.05 2609.19 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
42. ttna ttna 344.18 2580.18
43. col1a1b ENSDARG00000035809 342.25 2565.71 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
44. hmga1a ENSDARG00000028335 340.31 2551.17 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
45. si:ch211-226o13.2 334.51 2507.69 si:ch211-226o13.2
46. rpl8 ENSDARG00000014867 328.71 2464.21 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
47. rpl21 ENSDARG00000010516, ENSDARG00000110263 311.31 2333.77 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
48. hspa8 ENSDARG00000068992, ENSDARG00000114726 301.64 2261.28 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
49. pvalb4 ENSDARG00000024433 299.71 2246.81 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
50. rps26l ENSDARG00000030408 295.84 2217.80 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
51. rpl18a ENSDARG00000025073 291.97 2188.78 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
52. ptmab ENSDARG00000101766 290.04 2174.31 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
53. rps23 ENSDARG00000021838 290.04 2174.31 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
54. cfl1l ENSDARG00000012972 288.11 2159.85 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
55. myl10 ENSDARG00000062592 282.30 2116.29 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
56. rplp1 ENSDARG00000021864 282.30 2116.29 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
57. cyt1l ENSDARG00000036832 270.70 2029.33 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
58. rpl26 ENSDARG00000102317 270.70 2029.33 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
59. rpl9 ENSDARG00000037350, ENSDARG00000112384 270.70 2029.33 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
60. hbae3 ENSDARG00000079305 264.90 1985.85 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
61. zgc:112425 zgc:112425 264.90 1985.85
62. ttnb ttnb 262.97 1971.38
63. rps20 ENSDARG00000036044 259.10 1942.37 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
64. rps14 ENSDARG00000036629 257.17 1927.90 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
65. mt-co1 ENSDARG00000063905 255.23 1913.36 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
66. rpl11 ENSDARG00000043509 255.23 1913.36 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
67. rpl36a ENSDARG00000058105, ENSDARG00000112656 249.43 1869.88 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
68. col2a1a ENSDARG00000069093, ENSDARG00000111202 247.50 1855.41 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
69. tpm3 ENSDARG00000005162 247.50 1855.41 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
70. gapdh ENSDARG00000043457 245.57 1840.94 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
71. rpl19 ENSDARG00000013307 241.70 1811.93 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
72. ATP5B 235.90 1768.45 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
73. aldoab ENSDARG00000034470 235.90 1768.45 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
74. id1 ENSDARG00000040764 235.90 1768.45 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
75. nme2b.2 ENSDARG00000099420 233.96 1753.91 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
76. rps12 ENSDARG00000036875, ENSDARG00000115157 228.16 1710.42 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
77. atp5g3b 226.23 1695.96 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
78. rps2 ENSDARG00000077291 226.23 1695.96 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
79. icn ENSDARG00000009978 222.36 1666.94 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
80. rplp2 ENSDARG00000101406 220.43 1652.48 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
81. rps27.1 ENSDARG00000023298 220.43 1652.48 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
82. rps19 ENSDARG00000030602 218.50 1638.01 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
83. eif5a ENSDARG00000017235 216.56 1623.46 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
84. rps27a ENSDARG00000032725, ENSDARG00000114059 214.63 1609.00 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
85. hbbe3 ENSDARG00000038147, ENSDARG00000109344 199.16 1493.02 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
86. rplp0 ENSDARG00000051783 197.23 1478.56 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
87. rps15a ENSDARG00000010160 193.36 1449.54 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
88. atp5a1 191.43 1435.07 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
89. ldb3b ENSDARG00000099974 189.49 1420.53 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
90. rpl36 ENSDARG00000100588 189.49 1420.53 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
91. rpsa ENSDARG00000019181 187.56 1406.06 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
92. mt-nd3 ENSDARG00000063914 185.62 1391.52 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
93. rpl5b ENSDARG00000015862, ENSDARG00000109661 185.62 1391.52 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
94. rps9 ENSDARG00000011405, ENSDARG00000113248 181.76 1362.58 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
95. rpl27 ENSDARG00000015128 179.82 1348.04 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
96. rps5 ENSDARG00000043453 179.82 1348.04 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
97. rpl15 ENSDARG00000009285 175.96 1319.10 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
98. rps15 ENSDARG00000070849, ENSDARG00000110979 174.02 1304.56 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
99. atp5g1 172.09 1290.09 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
100. faua ENSDARG00000099022 172.09 1290.09 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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