Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s48.

Sample reads: 133,409. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 21897.34 164137.12
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3881.83 29097.25 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 3654.84 27395.79 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckma ENSDARG00000035327, ENSDARG00000114671 2065.85 15485.11 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
5. mylz3 ENSDARG00000017441 2009.54 15063.02 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
6. ckmb ENSDARG00000040565 1995.47 14957.56 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
7. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1995.47 14957.56 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
8. actc1b ENSDARG00000099197 1550.27 11620.45 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
9. atp2a1 ENSDARG00000020574 1240.57 9299.01 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
10. tmsb4x ENSDARG00000077777 1189.54 8916.50 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
11. mt-nd2 ENSDARG00000063899 1157.86 8679.04 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
12. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1122.67 8415.26 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
13. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 994.21 7452.36 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
14. mt-co2 ENSDARG00000063908 971.34 7280.93 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
15. myhz2 ENSDARG00000012944 955.50 7162.20 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
16. mt-nd4 ENSDARG00000063917 927.35 6951.19 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
17. actb2 ENSDARG00000037870 907.99 6806.07 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
18. acta1b ENSDARG00000055618 865.76 6489.53 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
19. mt-co3 ENSDARG00000063912 849.92 6370.79 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
20. mt-atp6 ENSDARG00000063911 844.64 6331.22 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
21. myhz1.3 ENSDARG00000067997 767.22 5750.89 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
22. pvalb1 ENSDARG00000037789 767.22 5750.89 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
23. tnnt3a ENSDARG00000030270 739.06 5539.81 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
24. col1a1a ENSDARG00000012405, ENSDARG00000116113 610.61 4576.98 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
25. ttna ttna 605.33 4537.41
26. eef1a1l1 ENSDARG00000020850 589.49 4418.67 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
27. acta1a ENSDARG00000036371 580.69 4352.71 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
28. actb1 ENSDARG00000037746, ENSDARG00000113649 580.69 4352.71 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
29. tnni2a.4 ENSDARG00000029069 522.62 3917.43 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
30. si:dkey-151g10.6 si:dkey-151g10.6 520.86 3904.24
31. tnnt3b ENSDARG00000068457 505.03 3785.58 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
32. mt-nd1 ENSDARG00000063895 501.51 3759.20 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
33. mt-cyb ENSDARG00000063924 452.24 3389.88 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
34. ttnb ttnb 432.88 3244.76
35. ppiaa ENSDARG00000009212 381.85 2862.25 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
36. hmga1a ENSDARG00000028335 362.49 2717.14 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
37. zgc:66286 zgc:66286 355.45 2664.37
38. col1a1b ENSDARG00000035809 344.90 2585.29 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
39. si:ch211-226o13.2 322.02 2413.78 si:ch211-226o13.2
40. myl1 ENSDARG00000014196 316.74 2374.21 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
41. mylpfb ENSDARG00000002589 316.74 2374.21 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
42. myl10 ENSDARG00000062592 295.62 2215.90 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
43. ptmab ENSDARG00000101766 292.11 2189.59 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
44. hspa8 ENSDARG00000068992, ENSDARG00000114726 288.59 2163.20 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
45. zgc:112425 zgc:112425 286.83 2150.01
46. rpl8 ENSDARG00000014867 283.31 2123.62 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
47. eef2b ENSDARG00000100371, ENSDARG00000109247 279.79 2097.24 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
48. zgc:92533 zgc:92533 267.47 2004.89
49. ATP5B 265.71 1991.70 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
50. hbae3 ENSDARG00000079305 251.63 1886.16 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
51. btf3 ENSDARG00000035400, ENSDARG00000116462 249.87 1872.96 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
52. tpm3 ENSDARG00000005162 249.87 1872.96 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
53. rpl18a ENSDARG00000025073 244.59 1833.39 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
54. rpl26 ENSDARG00000102317 237.56 1780.69 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
55. pvalb4 ENSDARG00000024433 234.04 1754.31 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
56. mt-co1 ENSDARG00000063905 232.28 1741.11 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
57. nme2b.2 ENSDARG00000099420 232.28 1741.11 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
58. rps23 ENSDARG00000021838 232.28 1741.11 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
59. col2a1a ENSDARG00000069093, ENSDARG00000111202 227.00 1701.54 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
60. rpl19 ENSDARG00000013307 227.00 1701.54 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
61. hbbe3 ENSDARG00000038147, ENSDARG00000109344 225.24 1688.34 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
62. hbbe1.1 ENSDARG00000113599 219.96 1648.77 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
63. aldoab ENSDARG00000034470 216.44 1622.38 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
64. gapdh ENSDARG00000043457 216.44 1622.38 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
65. cyt1l ENSDARG00000036832 214.68 1609.19 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
66. rpl9 ENSDARG00000037350, ENSDARG00000112384 214.68 1609.19 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
67. rpl10a ENSDARG00000042905, ENSDARG00000115649 207.64 1556.42 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
68. rpl21 ENSDARG00000010516, ENSDARG00000110263 200.60 1503.65 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
69. rpl23 ENSDARG00000053457 198.84 1490.46 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
70. atp5g3b 197.08 1477.26 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
71. rps14 ENSDARG00000036629 195.32 1464.07 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
72. cfl1l ENSDARG00000012972 191.80 1437.69 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
73. rpl11 ENSDARG00000043509 191.80 1437.69 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
74. rps26l ENSDARG00000030408 188.28 1411.30 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
75. rps27a ENSDARG00000032725, ENSDARG00000114059 186.53 1398.18 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
76. eif5a ENSDARG00000017235 179.49 1345.41 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
77. id1 ENSDARG00000040764 177.73 1332.22 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
78. rplp0 ENSDARG00000051783 167.17 1253.07 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
79. rps20 ENSDARG00000036044 167.17 1253.07 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
80. AC024175.17 AC024175.17 165.41 1239.87
81. tmem38a ENSDARG00000024047 165.41 1239.87 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
82. rps6 ENSDARG00000019778 163.65 1226.68 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
83. AL954137.2 ENSDARG00000114408 160.13 1200.30
84. atp5a1 160.13 1200.30 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
85. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 160.13 1200.30 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
86. smyhc1 ENSDARG00000099959, ENSDARG00000115916 160.13 1200.30 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
87. rplp1 ENSDARG00000021864 158.37 1187.10 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
88. pabpc1a ENSDARG00000017219 156.61 1173.91 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
89. rps19 ENSDARG00000030602 156.61 1173.91 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
90. rpsa ENSDARG00000019181 156.61 1173.91 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
91. rps12 ENSDARG00000036875, ENSDARG00000115157 151.33 1134.33 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
92. col1a2 ENSDARG00000020007 149.57 1121.14 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
93. fkbp1aa ENSDARG00000022684 149.57 1121.14 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
94. rpl36a ENSDARG00000058105, ENSDARG00000112656 149.57 1121.14 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
95. rps2 ENSDARG00000077291 147.81 1107.95 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
96. rpl6 ENSDARG00000058451 146.05 1094.76 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
97. rpl7 ENSDARG00000007320 146.05 1094.76 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
98. si:dkeyp-113d7.4 si:dkeyp-113d7.4 142.53 1068.37
99. col11a1a ENSDARG00000026165, ENSDARG00000115341 140.77 1055.18 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
100. si:dkey-150i13.2 ENSDARG00000071052 140.77 1055.18 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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