Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s47.

Sample reads: 133,413. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 15594.95 116892.27
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4162.40 31199.36 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 3662.55 27452.72 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 2259.82 16938.53 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. ckma ENSDARG00000035327, ENSDARG00000114671 2131.58 15977.30 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
6. mylz3 ENSDARG00000017441 2083.17 15614.44 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
7. actc1b ENSDARG00000099197 1842.40 13809.75 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
8. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1693.23 12691.64 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
9. mt-nd2 ENSDARG00000063899 1510.03 11318.46 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
10. mt-nd4 ENSDARG00000063917 1470.78 11024.26 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
11. atp2a1 ENSDARG00000020574 1431.52 10729.99 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
12. tmsb4x ENSDARG00000077777 1164.58 8729.13 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
13. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1126.64 8444.75 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
14. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1126.64 8444.75 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
15. mt-co2 ENSDARG00000063908 1088.69 8160.30 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
16. mt-atp6 ENSDARG00000063911 1021.95 7660.05 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
17. acta1b ENSDARG00000055618 1018.03 7630.67 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
18. mt-co3 ENSDARG00000063912 946.06 7091.21 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. myhz2 ENSDARG00000012944 884.56 6630.24 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
20. myhz1.3 ENSDARG00000067997 866.24 6492.92 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
21. actb2 ENSDARG00000037870 863.62 6473.28 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
22. tnnt3a ENSDARG00000030270 836.14 6267.30 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
23. pvalb1 ENSDARG00000037789 751.09 5629.81 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
24. acta1a ENSDARG00000036371 709.22 5315.97 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
25. tnni2a.4 ENSDARG00000029069 660.80 4953.04 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
26. mt-cyb ENSDARG00000063924 639.87 4796.16 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
27. ttna ttna 618.93 4639.20
28. mt-nd1 ENSDARG00000063895 616.31 4619.56 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
29. col1a1a ENSDARG00000012405, ENSDARG00000116113 592.76 4443.04 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
30. eef1a1l1 ENSDARG00000020850 584.91 4384.21 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
31. tnnt3b ENSDARG00000068457 544.34 4080.11 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
32. myl1 ENSDARG00000014196 516.87 3874.21 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
33. actb1 ENSDARG00000037746, ENSDARG00000113649 494.62 3707.43 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
34. ttnb ttnb 489.39 3668.23
35. si:dkey-151g10.6 si:dkey-151g10.6 473.68 3550.48
36. zgc:66286 zgc:66286 456.67 3422.98
37. ppiaa ENSDARG00000009212 414.80 3109.14 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
38. zgc:112425 zgc:112425 358.53 2687.37
39. col1a1b ENSDARG00000035809 349.38 2618.79 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
40. hmga1a ENSDARG00000028335 336.29 2520.67 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
41. si:ch211-226o13.2 331.06 2481.47 si:ch211-226o13.2
42. col2a1a ENSDARG00000069093, ENSDARG00000111202 310.12 2324.51 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
43. btf3 ENSDARG00000035400, ENSDARG00000116462 303.58 2275.49 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
44. rpl23 ENSDARG00000053457 302.27 2265.67 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
45. mt-co1 ENSDARG00000063905 300.96 2255.85 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
46. mylpfb ENSDARG00000002589 298.34 2236.21 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
47. eef2b ENSDARG00000100371, ENSDARG00000109247 287.87 2157.74 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
48. hbae3 ENSDARG00000079305 277.41 2079.33 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
49. gapdh ENSDARG00000043457 264.32 1981.22 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
50. ptmab ENSDARG00000101766 264.32 1981.22 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
51. cyt1l ENSDARG00000036832 259.09 1942.01 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
52. tpm3 ENSDARG00000005162 257.78 1932.20 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
53. hspa8 ENSDARG00000068992, ENSDARG00000114726 253.85 1902.74 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
54. myl10 ENSDARG00000062592 253.85 1902.74 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
55. rpl21 ENSDARG00000010516, ENSDARG00000110263 252.54 1892.92 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
56. nme2b.2 ENSDARG00000099420 251.24 1883.17 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
57. zgc:92533 zgc:92533 247.31 1853.72
58. cfl1l ENSDARG00000012972 246.00 1843.90 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
59. rpl8 ENSDARG00000014867 242.08 1814.52 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
60. rpl11 ENSDARG00000043509 232.92 1745.86 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
61. rps23 ENSDARG00000021838 227.68 1706.58 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
62. aldoab ENSDARG00000034470 222.45 1667.38 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
63. rpl26 ENSDARG00000102317 215.91 1618.36 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
64. ATP5B 214.60 1608.54 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
65. smyhc1 ENSDARG00000099959, ENSDARG00000115916 210.67 1579.08 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
66. eif5a ENSDARG00000017235 209.36 1569.26 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
67. pvalb4 ENSDARG00000024433 208.05 1559.44 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
68. rpl10a ENSDARG00000042905, ENSDARG00000115649 208.05 1559.44 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
69. rps14 ENSDARG00000036629 208.05 1559.44 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
70. rplp1 ENSDARG00000021864 206.75 1549.70 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
71. hbbe3 ENSDARG00000038147, ENSDARG00000109344 202.82 1520.24 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
72. rps27a ENSDARG00000032725, ENSDARG00000114059 202.82 1520.24 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
73. atp5a1 196.28 1471.22 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
74. rpl18a ENSDARG00000025073 193.66 1451.58 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
75. rpl9 ENSDARG00000037350, ENSDARG00000112384 193.66 1451.58 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
76. rps26l ENSDARG00000030408 187.12 1402.56 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
77. hbbe1.1 ENSDARG00000113599 183.19 1373.10 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
78. rplp0 ENSDARG00000051783 183.19 1373.10 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
79. atp5g3b 176.65 1324.08 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
80. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 171.42 1284.88 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
81. rpsa ENSDARG00000019181 170.11 1275.06 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
82. rpl36a ENSDARG00000058105, ENSDARG00000112656 167.49 1255.42 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
83. col1a2 ENSDARG00000020007 164.87 1235.79 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
84. pkmb ENSDARG00000099860 159.64 1196.58 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
85. rpl19 ENSDARG00000013307 159.64 1196.58 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
86. col11a1a ENSDARG00000026165, ENSDARG00000115341 155.71 1167.13 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
87. icn ENSDARG00000009978 155.71 1167.13 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
88. id1 ENSDARG00000040764 154.41 1157.38 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
89. mt-nd3 ENSDARG00000063914 154.41 1157.38 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
90. si:dkeyp-113d7.4 si:dkeyp-113d7.4 154.41 1157.38
91. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 151.79 1137.75 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
92. rps4x ENSDARG00000014690 151.79 1137.75 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
93. AC024175.17 AC024175.17 150.48 1127.93
94. fkbp1aa ENSDARG00000022684 150.48 1127.93 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
95. zgc:113413 zgc:113413 150.48 1127.93
96. col9a1 col9a1 149.17 1118.11
97. rpl5b ENSDARG00000015862, ENSDARG00000109661 149.17 1118.11 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
98. rps2 ENSDARG00000077291 147.86 1108.29 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
99. rps20 ENSDARG00000036044 146.55 1098.47 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
100. rps12 ENSDARG00000036875, ENSDARG00000115157 143.94 1078.91 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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