Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s46.

Sample reads: 133,402. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 11877.81 89037.39
2. tpma ENSDARG00000033683 4102.69 30754.22 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 4016.29 30106.56 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. ckmb ENSDARG00000040565 2486.40 18638.33 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. mylz3 ENSDARG00000017441 2478.54 18579.41 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
6. ckma ENSDARG00000035327, ENSDARG00000114671 2256.00 16911.23 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2016.00 15112.16 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
8. mt-nd2 ENSDARG00000063899 1728.00 12953.28 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
9. atp2a1 ENSDARG00000020574 1502.84 11265.46 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
10. mt-atp6 ENSDARG00000063911 1346.62 10094.41 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
11. mt-nd4 ENSDARG00000063917 1325.67 9937.37 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
12. mt-co2 ENSDARG00000063908 1291.64 9682.28 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
13. actc1b ENSDARG00000099197 1273.31 9544.87 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
14. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1236.65 9270.07 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
15. tmsb4x ENSDARG00000077777 1194.76 8956.05 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
16. acta1b ENSDARG00000055618 1130.18 8471.96 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
17. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1115.34 8360.71 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
18. myhz1.3 ENSDARG00000067997 1110.98 8328.03 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
19. mt-co3 ENSDARG00000063912 993.16 7444.84 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
20. actb2 ENSDARG00000037870 992.29 7438.32 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
21. pvalb1 ENSDARG00000037789 875.34 6561.65 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
22. tnnt3a ENSDARG00000030270 868.36 6509.32 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
23. myhz2 ENSDARG00000012944 829.96 6221.47 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
24. tnni2a.4 ENSDARG00000029069 755.78 5665.41 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
25. mt-nd1 ENSDARG00000063895 740.07 5547.65 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
26. acta1a ENSDARG00000036371 713.89 5351.40 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
27. hbae3 ENSDARG00000079305 658.04 4932.74 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
28. mt-cyb ENSDARG00000063924 644.95 4834.62 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
29. eef1a1l1 ENSDARG00000020850 610.91 4579.45 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
30. tnnt3b ENSDARG00000068457 593.45 4448.57 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
31. ttna ttna 567.27 4252.32
32. col1a1a ENSDARG00000012405, ENSDARG00000116113 562.91 4219.64 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
33. actb1 ENSDARG00000037746, ENSDARG00000113649 559.42 4193.47 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
34. si:dkey-151g10.6 si:dkey-151g10.6 493.09 3696.26
35. hbbe1.1 ENSDARG00000113599 452.07 3388.77 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
36. ppiaa ENSDARG00000009212 443.35 3323.40 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
37. hbbe3 ENSDARG00000038147, ENSDARG00000109344 438.98 3290.64 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
38. si:ch211-226o13.2 435.49 3264.48 si:ch211-226o13.2
39. ttnb ttnb 400.58 3002.79
40. zgc:66286 zgc:66286 390.11 2924.31
41. myl1 ENSDARG00000014196 360.44 2701.90 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
42. hmga1a ENSDARG00000028335 355.20 2662.62 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
43. mylpfb ENSDARG00000002589 343.85 2577.54 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
44. hspa8 ENSDARG00000068992, ENSDARG00000114726 337.75 2531.81 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
45. col1a1b ENSDARG00000035809 331.64 2486.01 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
46. btf3 ENSDARG00000035400, ENSDARG00000116462 329.02 2466.37 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
47. ptmab ENSDARG00000101766 309.82 2322.45 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
48. zgc:92533 zgc:92533 303.71 2276.64
49. myl10 ENSDARG00000062592 298.47 2237.36 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
50. mt-co1 ENSDARG00000063905 296.73 2224.32 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
51. eef2b ENSDARG00000100371, ENSDARG00000109247 293.24 2198.16 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
52. aldoab ENSDARG00000034470 289.75 2172.00 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
53. tpm3 ENSDARG00000005162 286.25 2145.76 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
54. zgc:112425 zgc:112425 284.51 2132.72
55. rpl23 ENSDARG00000053457 283.64 2126.20 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
56. rpl21 ENSDARG00000010516, ENSDARG00000110263 280.15 2100.04 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
57. rpl8 ENSDARG00000014867 278.40 2086.92 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
58. rpl18a ENSDARG00000025073 269.67 2021.48 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
59. rpl10a ENSDARG00000042905, ENSDARG00000115649 267.05 2001.84 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
60. rpl26 ENSDARG00000102317 245.24 1838.35 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
61. cfl1l ENSDARG00000012972 241.75 1812.19 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
62. gapdh ENSDARG00000043457 241.75 1812.19 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
63. rps23 ENSDARG00000021838 235.64 1766.38 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
64. ATP5B 232.15 1740.22 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
65. col2a1a ENSDARG00000069093, ENSDARG00000111202 228.65 1713.99 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
66. cyt1l ENSDARG00000036832 226.04 1694.42 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
67. nme2b.2 ENSDARG00000099420 225.16 1687.82 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
68. rpl11 ENSDARG00000043509 223.42 1674.78 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
69. rpl9 ENSDARG00000037350, ENSDARG00000112384 219.93 1648.62 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
70. hbbe1.1_1 ENSDARG00000113599 216.44 1622.46 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
71. rpl36a ENSDARG00000058105, ENSDARG00000112656 213.82 1602.82 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
72. rps14 ENSDARG00000036629 209.45 1570.06 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
73. rps26l ENSDARG00000030408 205.96 1543.90 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
74. atp5g3b 205.09 1537.38 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
75. pvalb4 ENSDARG00000024433 204.22 1530.86 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
76. fabp3 ENSDARG00000023290 198.11 1485.05 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
77. rpl19 ENSDARG00000013307 198.11 1485.05 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
78. rplp1 ENSDARG00000021864 193.75 1452.37 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
79. tmem38a ENSDARG00000024047 192.00 1439.25 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
80. rps27a ENSDARG00000032725, ENSDARG00000114059 188.51 1413.09 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
81. eif5a ENSDARG00000017235 185.89 1393.45 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
82. icn ENSDARG00000009978 183.27 1373.81 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
83. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 180.65 1354.17 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
84. rps20 ENSDARG00000036044 178.04 1334.61 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
85. rpl36 ENSDARG00000100588 175.42 1314.97 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
86. smyhc1 ENSDARG00000099959, ENSDARG00000115916 175.42 1314.97 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
87. fkbp1aa ENSDARG00000022684 171.93 1288.81 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
88. rps15 ENSDARG00000070849, ENSDARG00000110979 170.18 1275.69 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
89. rpl5b ENSDARG00000015862, ENSDARG00000109661 168.44 1262.65 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
90. rplp0 ENSDARG00000051783 167.56 1256.05 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
91. col11a1a ENSDARG00000026165, ENSDARG00000115341 162.33 1216.84 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
92. pabpc1a ENSDARG00000017219 162.33 1216.84 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
93. mt-nd3 ENSDARG00000063914 158.84 1190.68 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
94. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 158.84 1190.68 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
95. rps4x ENSDARG00000014690 157.96 1184.09 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
96. id1 ENSDARG00000040764 156.22 1171.04 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
97. pkmb ENSDARG00000099860 155.35 1164.52 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
98. rps2 ENSDARG00000077291 154.47 1157.92 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
99. rpl6 ENSDARG00000058451 150.11 1125.24 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
100. col1a2 ENSDARG00000020007 149.24 1118.72 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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