Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s45.

Sample reads: 133,399. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 11485.50 86098.58
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4344.06 32564.31 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 4096.15 30705.91 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 2327.44 17447.15 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. ckma ENSDARG00000035327, ENSDARG00000114671 2009.22 15061.69 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
6. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2003.67 15020.08 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
7. mylz3 ENSDARG00000017441 1918.57 14382.15 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
8. mt-nd2 ENSDARG00000063899 1646.60 12343.38 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
9. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1346.88 10096.60 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
10. mt-nd4 ENSDARG00000063917 1304.33 9777.63 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
11. myhz1.3 ENSDARG00000067997 1274.73 9555.74 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
12. atp2a1 ENSDARG00000020574 1248.83 9361.59 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
13. mt-co2 ENSDARG00000063908 1237.73 9278.38 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
14. acta1b ENSDARG00000055618 1161.87 8709.71 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
15. tmsb4x ENSDARG00000077777 1108.22 8307.53 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
16. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1067.52 8002.43 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
17. actc1b ENSDARG00000099197 1060.11 7946.89 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
18. mt-atp6 ENSDARG00000063911 1056.41 7919.15 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
19. mt-co3 ENSDARG00000063912 886.20 6643.21 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
20. actb2 ENSDARG00000037870 871.40 6532.26 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
21. acta1a ENSDARG00000036371 834.40 6254.90 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
22. tnnt3a ENSDARG00000030270 775.20 5811.12 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
23. myhz2 ENSDARG00000012944 741.90 5561.49 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
24. pvalb1 ENSDARG00000037789 708.59 5311.79 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
25. si:dkey-151g10.6 si:dkey-151g10.6 680.84 5103.77
26. tnni2a.4 ENSDARG00000029069 680.84 5103.77 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
27. eef1a1l1 ENSDARG00000020850 660.49 4951.22 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
28. mt-nd1 ENSDARG00000063895 658.64 4937.35 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
29. hbae3 ENSDARG00000079305 617.94 4632.25 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
30. ppiaa ENSDARG00000009212 571.68 4285.48 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
31. hbbe3 ENSDARG00000038147, ENSDARG00000109344 538.38 4035.85 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
32. actb1 ENSDARG00000037746, ENSDARG00000113649 477.33 3578.20 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
33. tnnt3b ENSDARG00000068457 473.63 3550.47 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
34. ttna ttna 453.28 3397.92
35. mt-cyb ENSDARG00000063924 438.48 3286.97 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
36. zgc:66286 zgc:66286 427.38 3203.76
37. hbbe1.1 ENSDARG00000113599 416.28 3120.55 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
38. rpl10a ENSDARG00000042905, ENSDARG00000115649 392.22 2940.19 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
39. col1a1a ENSDARG00000012405, ENSDARG00000116113 381.12 2856.98 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
40. btf3 ENSDARG00000035400, ENSDARG00000116462 377.42 2829.25 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
41. hmga1a ENSDARG00000028335 373.72 2801.51 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
42. myl1 ENSDARG00000014196 373.72 2801.51 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
43. si:ch211-226o13.2 370.02 2773.78 si:ch211-226o13.2
44. hspa8 ENSDARG00000068992, ENSDARG00000114726 368.17 2759.91 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
45. mylpfb ENSDARG00000002589 362.62 2718.30 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
46. ttnb ttnb 357.07 2676.70
47. rpl8 ENSDARG00000014867 351.52 2635.09 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
48. rpl23 ENSDARG00000053457 336.72 2524.15 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
49. rpl18a ENSDARG00000025073 323.77 2427.07 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
50. zgc:112425 zgc:112425 320.07 2399.34
51. myl10 ENSDARG00000062592 316.37 2371.60 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
52. zgc:92533 zgc:92533 314.52 2357.73
53. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 310.82 2330.00 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
54. rpl11 ENSDARG00000043509 308.97 2316.13 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
55. eef2b ENSDARG00000100371, ENSDARG00000109247 297.87 2232.92 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
56. ptmab ENSDARG00000101766 294.17 2205.18 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
57. rpl26 ENSDARG00000102317 294.17 2205.18 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
58. tpm3 ENSDARG00000005162 292.32 2191.31 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
59. aldoab ENSDARG00000034470 290.47 2177.45 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
60. gapdh ENSDARG00000043457 288.62 2163.58 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
61. rpl21 ENSDARG00000010516, ENSDARG00000110263 279.37 2094.24 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
62. rps14 ENSDARG00000036629 273.82 2052.63 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
63. rps27a ENSDARG00000032725, ENSDARG00000114059 268.27 2011.03 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
64. rplp1 ENSDARG00000021864 264.57 1983.29 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
65. cfl1l ENSDARG00000012972 262.72 1969.42 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
66. cyt1l ENSDARG00000036832 262.72 1969.42 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
67. rpl9 ENSDARG00000037350, ENSDARG00000112384 259.02 1941.69 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
68. id1 ENSDARG00000040764 253.47 1900.08 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
69. mt-co1 ENSDARG00000063905 246.07 1844.61 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
70. rps23 ENSDARG00000021838 236.81 1775.20 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
71. col1a1b ENSDARG00000035809 225.71 1691.99 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
72. fkbp1aa ENSDARG00000022684 225.71 1691.99 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
73. nme2b.2 ENSDARG00000099420 222.01 1664.25 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
74. rps26l ENSDARG00000030408 222.01 1664.25 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
75. hbbe1.1_1 ENSDARG00000113599 212.76 1594.91 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
76. ATP5B 207.21 1553.31 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
77. hbae1_1 207.21 1553.31 hemoglobin, alpha embryonic 1
78. smyhc1 ENSDARG00000099959, ENSDARG00000115916 207.21 1553.31 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
79. fabp3 ENSDARG00000023290 205.36 1539.44 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
80. rpl19 ENSDARG00000013307 205.36 1539.44 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
81. rps4x ENSDARG00000014690 205.36 1539.44 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
82. rpsa ENSDARG00000019181 205.36 1539.44 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
83. pvalb4 ENSDARG00000024433 203.51 1525.57 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
84. rpl27 ENSDARG00000015128 197.96 1483.96 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
85. gch2 ENSDARG00000099101 194.26 1456.23 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
86. rpl36 ENSDARG00000100588 194.26 1456.23 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
87. pkmb ENSDARG00000099860 192.41 1442.36 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
88. rpl7 ENSDARG00000007320 192.41 1442.36 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
89. pabpc1a ENSDARG00000017219 185.01 1386.89 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
90. rps19 ENSDARG00000030602 185.01 1386.89 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
91. tmem38a ENSDARG00000024047 185.01 1386.89 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
92. rpl5b ENSDARG00000015862, ENSDARG00000109661 183.16 1373.02 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
93. atp5g3b 181.31 1359.15 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
94. icn ENSDARG00000009978 179.46 1345.28 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
95. rps20 ENSDARG00000036044 179.46 1345.28 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
96. si:dkeyp-113d7.4 si:dkeyp-113d7.4 179.46 1345.28
97. pfn1 ENSDARG00000088091 173.91 1303.68 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
98. rpl36a ENSDARG00000058105, ENSDARG00000112656 173.91 1303.68 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
99. rps12 ENSDARG00000036875, ENSDARG00000115157 173.91 1303.68 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
100. rps15a ENSDARG00000010160 173.91 1303.68 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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