Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s44.

Sample reads: 133,398. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 10591.95 79400.87
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4148.47 31098.35 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 4120.74 30890.47 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. mylz3 ENSDARG00000017441 2362.35 17708.98 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
5. ckma ENSDARG00000035327, ENSDARG00000114671 2348.49 17605.08 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
6. ckmb ENSDARG00000040565 1946.51 14591.70 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
7. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1879.19 14087.05 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
8. actc1b ENSDARG00000099197 1657.41 12424.51 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
9. mt-co2 ENSDARG00000063908 1481.17 11103.36 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
10. mt-nd2 ENSDARG00000063899 1473.25 11043.98 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
11. atp2a1 ENSDARG00000020574 1455.43 10910.40 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
12. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1352.46 10138.50 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
13. mt-nd4 ENSDARG00000063917 1304.94 9782.28 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
14. tmsb4x ENSDARG00000077777 1249.49 9366.60 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
15. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1225.73 9188.49 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
16. myhz1.3 ENSDARG00000067997 1136.62 8520.49 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
17. acta1b ENSDARG00000055618 1091.08 8179.11 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
18. mt-atp6 ENSDARG00000063911 1033.65 7748.59 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
19. actb2 ENSDARG00000037870 1027.71 7704.06 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
20. mt-co3 ENSDARG00000063912 1011.87 7585.32 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
21. tnnt3a ENSDARG00000030270 811.87 6086.05 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
22. pvalb1 ENSDARG00000037789 782.17 5863.41 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
23. acta1a ENSDARG00000036371 663.36 4972.77 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
24. tnni2a.4 ENSDARG00000029069 647.52 4854.03 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
25. eef1a1l1 ENSDARG00000020850 627.72 4705.60 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
26. myhz2 ENSDARG00000012944 615.83 4616.47 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
27. ppiaa ENSDARG00000009212 605.93 4542.26 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
28. mt-cyb ENSDARG00000063924 594.05 4453.20 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
29. si:dkey-151g10.6 si:dkey-151g10.6 582.17 4364.14
30. ttna ttna 558.41 4186.03
31. mt-nd1 ENSDARG00000063895 556.43 4171.19 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
32. tnnt3b ENSDARG00000068457 540.59 4052.45 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
33. hbae3 ENSDARG00000079305 536.63 4022.76 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
34. actb1 ENSDARG00000037746, ENSDARG00000113649 526.73 3948.55 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
35. zgc:66286 zgc:66286 467.32 3503.19
36. col1a1a ENSDARG00000012405, ENSDARG00000116113 465.34 3488.35 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
37. ttnb ttnb 403.96 3028.22
38. si:ch211-226o13.2 390.09 2924.25 si:ch211-226o13.2
39. hbbe3 ENSDARG00000038147, ENSDARG00000109344 382.17 2864.88 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
40. eef2b ENSDARG00000100371, ENSDARG00000109247 374.25 2805.51 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
41. hspa8 ENSDARG00000068992, ENSDARG00000114726 370.29 2775.82 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
42. zgc:112425 zgc:112425 370.29 2775.82
43. myl1 ENSDARG00000014196 354.45 2657.08 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
44. btf3 ENSDARG00000035400, ENSDARG00000116462 352.47 2642.24 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
45. mylpfb ENSDARG00000002589 346.53 2597.71 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
46. hmga1a ENSDARG00000028335 338.61 2538.34 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
47. hbbe1.1 ENSDARG00000113599 336.63 2523.49 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
48. myl10 ENSDARG00000062592 318.81 2389.91 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
49. ptmab ENSDARG00000101766 310.89 2330.54 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
50. col1a1b ENSDARG00000035809 299.01 2241.48 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
51. rpl18a ENSDARG00000025073 295.05 2211.80 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
52. cyt1l ENSDARG00000036832 285.15 2137.58 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
53. col2a1a ENSDARG00000069093, ENSDARG00000111202 281.18 2107.82 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
54. aldoab ENSDARG00000034470 277.22 2078.14 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
55. rps26l ENSDARG00000030408 277.22 2078.14 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
56. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 275.24 2063.29 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
57. rpl8 ENSDARG00000014867 275.24 2063.29 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
58. tpm3 ENSDARG00000005162 273.26 2048.45 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
59. rpl10a ENSDARG00000042905, ENSDARG00000115649 267.32 2003.92 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
60. zgc:92533 zgc:92533 265.34 1989.08
61. gapdh ENSDARG00000043457 263.36 1974.24 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
62. rpl23 ENSDARG00000053457 259.40 1944.55 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
63. rpl11 ENSDARG00000043509 255.44 1914.87 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
64. rps27a ENSDARG00000032725, ENSDARG00000114059 255.44 1914.87 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
65. rps23 ENSDARG00000021838 253.46 1900.02 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
66. ATP5B 251.48 1885.18 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
67. mt-co1 ENSDARG00000063905 249.50 1870.34 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
68. rplp1 ENSDARG00000021864 247.52 1855.49 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
69. rpl21 ENSDARG00000010516, ENSDARG00000110263 239.60 1796.12 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
70. rpsa ENSDARG00000019181 233.66 1751.60 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
71. rpl26 ENSDARG00000102317 229.70 1721.91 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
72. pvalb4 ENSDARG00000024433 227.72 1707.07 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
73. rpl9 ENSDARG00000037350, ENSDARG00000112384 221.78 1662.54 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
74. rps14 ENSDARG00000036629 221.78 1662.54 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
75. id1 ENSDARG00000040764 215.84 1618.01 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
76. cfl1l ENSDARG00000012972 213.86 1603.17 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
77. nme2b.2 ENSDARG00000099420 209.90 1573.48 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
78. rpl36a ENSDARG00000058105, ENSDARG00000112656 209.90 1573.48 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
79. hbbe1.1_1 ENSDARG00000113599 207.92 1558.64 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
80. tmem38a ENSDARG00000024047 205.94 1543.80 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
81. krt8 ENSDARG00000058358, ENSDARG00000109279 203.96 1528.95 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
82. pabpc1a ENSDARG00000017219 203.96 1528.95 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
83. rpl19 ENSDARG00000013307 203.96 1528.95 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
84. pkmb ENSDARG00000099860 198.02 1484.43 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
85. rps20 ENSDARG00000036044 198.02 1484.43 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
86. atp5g3b 196.04 1469.58 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
87. rpl36 ENSDARG00000100588 194.06 1454.74 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
88. rps5 ENSDARG00000043453 194.06 1454.74 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
89. col11a1a ENSDARG00000026165, ENSDARG00000115341 192.08 1439.90 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
90. rplp0 ENSDARG00000051783 188.12 1410.21 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
91. col9a1 col9a1 182.18 1365.68
92. eif5a ENSDARG00000017235 182.18 1365.68 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
93. hbae1_1 182.18 1365.68 hemoglobin, alpha embryonic 1
94. rps2 ENSDARG00000077291 182.18 1365.68 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
95. rps15 ENSDARG00000070849, ENSDARG00000110979 174.26 1306.31 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
96. icn ENSDARG00000009978 170.30 1276.63 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
97. col1a2 ENSDARG00000020007 168.31 1261.71 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
98. rpl5b ENSDARG00000015862, ENSDARG00000109661 168.31 1261.71 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
99. rps19 ENSDARG00000030602 166.33 1246.87 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
100. rpl27 ENSDARG00000015128 164.35 1232.02 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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