Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s43.

Sample reads: 133,391. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 13950.60 104585.19
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3731.85 27977.02 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 3510.78 26319.70 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. mylz3 ENSDARG00000017441 2317.69 17375.31 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
5. ckmb ENSDARG00000040565 2282.85 17114.12 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1817.87 13628.25 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
7. mt-nd2 ENSDARG00000063899 1678.49 12583.34 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
8. mt-nd4 ENSDARG00000063917 1668.88 12511.30 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
9. ckma ENSDARG00000035327, ENSDARG00000114671 1643.65 12322.15 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
10. tmsb4x ENSDARG00000077777 1563.15 11718.66 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
11. mt-co2 ENSDARG00000063908 1372.11 10286.47 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
12. atp2a1 ENSDARG00000020574 1344.48 10079.33 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
13. actc1b ENSDARG00000099197 1304.83 9782.08 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
14. mt-atp6 ENSDARG00000063911 1212.31 9088.47 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
15. myhz1.3 ENSDARG00000067997 1141.42 8557.02 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
16. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1134.21 8502.97 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
17. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1129.41 8466.99 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
18. mt-co3 ENSDARG00000063912 1125.80 8439.92 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. acta1b ENSDARG00000055618 1010.46 7575.24 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
20. tnnt3a ENSDARG00000030270 860.27 6449.29 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
21. pvalb1 ENSDARG00000037789 848.26 6359.26 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
22. actb2 ENSDARG00000037870 800.20 5998.96 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
23. mt-cyb ENSDARG00000063924 659.62 4945.06 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
24. mt-nd1 ENSDARG00000063895 640.40 4800.97 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
25. tnni2a.4 ENSDARG00000029069 636.79 4773.90 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
26. eef1a1l1 ENSDARG00000020850 613.97 4602.83 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
27. acta1a ENSDARG00000036371 549.08 4116.36 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
28. tnnt3b ENSDARG00000068457 527.46 3954.27 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
29. ttna ttna 513.04 3846.17
30. ppiaa ENSDARG00000009212 501.02 3756.06 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
31. actb1 ENSDARG00000037746, ENSDARG00000113649 461.38 3458.88 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
32. col1a1a ENSDARG00000012405, ENSDARG00000116113 455.37 3413.83 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
33. myhz2 ENSDARG00000012944 449.36 3368.77 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
34. myl1 ENSDARG00000014196 445.76 3341.78 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
35. si:dkey-151g10.6 si:dkey-151g10.6 431.34 3233.68
36. ttnb ttnb 408.51 3062.53
37. si:ch211-226o13.2 372.46 2792.27 si:ch211-226o13.2
38. zgc:112425 zgc:112425 347.23 2603.12
39. mt-co1 ENSDARG00000063905 342.43 2567.14 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
40. hspa8 ENSDARG00000068992, ENSDARG00000114726 332.82 2495.09 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
41. mylpfb ENSDARG00000002589 319.60 2395.98 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
42. btf3 ENSDARG00000035400, ENSDARG00000116462 309.99 2323.94 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
43. eef2b ENSDARG00000100371, ENSDARG00000109247 309.99 2323.94 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
44. zgc:66286 zgc:66286 303.98 2278.88
45. hmga1a ENSDARG00000028335 302.78 2269.89 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
46. col1a1b ENSDARG00000035809 290.76 2179.78 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
47. ptmab ENSDARG00000101766 273.94 2053.68 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
48. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 272.74 2044.68 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
49. hbae3 ENSDARG00000079305 252.31 1891.52 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
50. rpl18a ENSDARG00000025073 251.11 1882.53 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
51. rpl26 ENSDARG00000102317 251.11 1882.53 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
52. rpl23 ENSDARG00000053457 249.91 1873.53 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
53. rpl10a ENSDARG00000042905, ENSDARG00000115649 248.71 1864.54 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
54. gapdh ENSDARG00000043457 245.11 1837.55 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
55. rps23 ENSDARG00000021838 235.49 1765.43 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
56. rps26l ENSDARG00000030408 231.89 1738.44 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
57. zgc:92533 zgc:92533 230.69 1729.44
58. aldoab ENSDARG00000034470 227.08 1702.38 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
59. rps27a ENSDARG00000032725, ENSDARG00000114059 227.08 1702.38 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
60. rpl8 ENSDARG00000014867 225.88 1693.38 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
61. col2a1a ENSDARG00000069093, ENSDARG00000111202 222.28 1666.39 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
62. myl10 ENSDARG00000062592 211.46 1585.28 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
63. cfl1l ENSDARG00000012972 210.26 1576.28 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
64. rpl21 ENSDARG00000010516, ENSDARG00000110263 210.26 1576.28 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
65. ATP5B 206.66 1549.29 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
66. atp5g3b 206.66 1549.29 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
67. id1 ENSDARG00000040764 203.05 1522.23 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
68. cyt1l ENSDARG00000036832 193.44 1450.19 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
69. rps20 ENSDARG00000036044 192.24 1441.19 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
70. rpl11 ENSDARG00000043509 188.64 1414.20 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
71. rps2 ENSDARG00000077291 186.23 1396.13 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
72. rpl9 ENSDARG00000037350, ENSDARG00000112384 185.03 1387.14 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
73. rplp1 ENSDARG00000021864 185.03 1387.14 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
74. tpm3 ENSDARG00000005162 185.03 1387.14 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
75. nme2b.2 ENSDARG00000099420 183.83 1378.14 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
76. eif5a ENSDARG00000017235 182.63 1369.14 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
77. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 182.63 1369.14 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
78. rpl19 ENSDARG00000013307 177.82 1333.09 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
79. rplp2 ENSDARG00000101406 176.62 1324.09 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
80. rpl36 ENSDARG00000100588 174.22 1306.10 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
81. rpl36a ENSDARG00000058105, ENSDARG00000112656 171.81 1288.03 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
82. fkbp1aa ENSDARG00000022684 169.41 1270.04 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
83. rpsa ENSDARG00000019181 169.41 1270.04 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
84. rps14 ENSDARG00000036629 164.61 1234.05 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
85. hbbe3 ENSDARG00000038147, ENSDARG00000109344 163.40 1224.98 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
86. rps27.1 ENSDARG00000023298 163.40 1224.98 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
87. hbbe1.1 ENSDARG00000113599 162.20 1215.98 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
88. mt-nd3 ENSDARG00000063914 159.80 1197.99 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
89. col1a2 ENSDARG00000020007 157.40 1180.00 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
90. pvalb4 ENSDARG00000024433 156.19 1170.93 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
91. rpl27 ENSDARG00000015128 156.19 1170.93 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
92. rplp0 ENSDARG00000051783 156.19 1170.93 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
93. rps19 ENSDARG00000030602 156.19 1170.93 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
94. AC024175.17 AC024175.17 154.99 1161.93
95. pkmb ENSDARG00000099860 153.79 1152.94 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
96. col11a1a ENSDARG00000026165, ENSDARG00000115341 152.59 1143.94 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
97. krt8 ENSDARG00000058358, ENSDARG00000109279 152.59 1143.94 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
98. rps12 ENSDARG00000036875, ENSDARG00000115157 150.19 1125.95 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
99. icn ENSDARG00000009978 148.99 1116.95 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
100. hmgn2 ENSDARG00000099572 144.18 1080.89 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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