Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s42.

Sample reads: 133,393. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 17032.91 127689.96
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3451.13 25871.95 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 3310.81 24820.02 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. mylz3 ENSDARG00000017441 2078.03 15578.29 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
5. ckmb ENSDARG00000040565 2026.80 15194.23 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. ckma ENSDARG00000035327, ENSDARG00000114671 1986.71 14893.69 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1887.60 14150.70 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
8. mt-nd2 ENSDARG00000063899 1386.46 10393.82 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
9. atp2a1 ENSDARG00000020574 1270.65 9525.63 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
10. actc1b ENSDARG00000099197 1129.22 8465.38 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
11. tmsb4x ENSDARG00000077777 1098.04 8231.63 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
12. mt-nd4 ENSDARG00000063917 1079.10 8089.65 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
13. acta1b ENSDARG00000055618 1077.99 8081.33 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
14. mt-co2 ENSDARG00000063908 1051.26 7880.94 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
15. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1027.88 7705.67 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
16. mt-atp6 ENSDARG00000063911 986.67 7396.73 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
17. myhz1.3 ENSDARG00000067997 974.42 7304.90 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
18. mt-co3 ENSDARG00000063912 898.70 6737.25 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. actb2 ENSDARG00000037870 895.36 6712.21 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
20. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 881.99 6611.98 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
21. pvalb1 ENSDARG00000037789 828.54 6211.28 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
22. eef1a1l1 ENSDARG00000020850 714.95 5359.74 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
23. tnnt3a ENSDARG00000030270 683.77 5125.99 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
24. apoc1l apoc1l 630.31 4725.22
25. acta1a ENSDARG00000036371 613.61 4600.03 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
26. mt-nd1 ENSDARG00000063895 591.34 4433.08 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
27. tnni2a.4 ENSDARG00000029069 511.15 3831.92 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
28. ppiaa ENSDARG00000009212 484.43 3631.61 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
29. mt-cyb ENSDARG00000063924 483.31 3623.21 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
30. tnnt3b ENSDARG00000068457 482.20 3614.89 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
31. si:dkey-151g10.6 si:dkey-151g10.6 478.86 3589.85
32. actb1 ENSDARG00000037746, ENSDARG00000113649 453.25 3397.86 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
33. col1a1a ENSDARG00000012405, ENSDARG00000116113 403.13 3022.13 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
34. myhz2 ENSDARG00000012944 402.02 3013.81 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
35. zgc:66286 zgc:66286 390.88 2930.30
36. ttna ttna 384.20 2880.22
37. apoa1b ENSDARG00000101324 383.09 2871.90 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
38. hmga1a ENSDARG00000028335 357.47 2679.83 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
39. apobb apobb 355.25 2663.19
40. btf3 ENSDARG00000035400, ENSDARG00000116462 340.77 2554.64 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
41. ttnb ttnb 337.43 2529.60
42. mylpfb ENSDARG00000002589 332.97 2496.16 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
43. ptmab ENSDARG00000101766 331.86 2487.84 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
44. si:ch211-226o13.2 330.75 2479.52 si:ch211-226o13.2
45. apoa2 ENSDARG00000015866 329.63 2471.12 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
46. hspa8 ENSDARG00000068992, ENSDARG00000114726 324.07 2429.44 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
47. myl1 ENSDARG00000014196 318.50 2387.69 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
48. zgc:112425 zgc:112425 317.38 2379.29
49. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 291.77 2187.30 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
50. myl10 ENSDARG00000062592 287.32 2153.94 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
51. rpl10a ENSDARG00000042905, ENSDARG00000115649 285.09 2137.22 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
52. zgc:92533 zgc:92533 285.09 2137.22
53. eef2b ENSDARG00000100371, ENSDARG00000109247 282.86 2120.51 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
54. tpm3 ENSDARG00000005162 272.84 2045.39 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
55. gapdh ENSDARG00000043457 267.27 2003.63 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
56. pvalb4 ENSDARG00000024433 267.27 2003.63 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
57. rpl8 ENSDARG00000014867 260.59 1953.56 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
58. aldoab ENSDARG00000034470 256.13 1920.12 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
59. col1a1b ENSDARG00000035809 253.91 1903.48 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
60. rpl23 ENSDARG00000053457 247.22 1853.32 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
61. rplp1 ENSDARG00000021864 243.88 1828.29 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
62. rpl11 ENSDARG00000043509 237.20 1778.21 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
63. mt-co1 ENSDARG00000063905 236.09 1769.89 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
64. rpl18a ENSDARG00000025073 228.29 1711.41 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
65. rpl21 ENSDARG00000010516, ENSDARG00000110263 223.84 1678.05 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
66. rpl26 ENSDARG00000102317 220.50 1653.01 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
67. rps27a ENSDARG00000032725, ENSDARG00000114059 218.27 1636.30 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
68. col2a1a ENSDARG00000069093, ENSDARG00000111202 214.93 1611.26 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
69. atp5g3b 212.70 1594.54 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
70. cfl1l ENSDARG00000012972 211.59 1586.22 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
71. rps23 ENSDARG00000021838 207.13 1552.78 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
72. fabp3 ENSDARG00000023290 206.02 1544.46 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
73. pabpc1a ENSDARG00000017219 204.91 1536.14 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
74. ATP5B 202.68 1519.42 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
75. nme2b.2 ENSDARG00000099420 198.23 1486.06 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
76. pkmb ENSDARG00000099860 197.11 1477.67 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
77. fkbp1aa ENSDARG00000022684 194.88 1460.95 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
78. rps14 ENSDARG00000036629 192.66 1444.31 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
79. cyt1l ENSDARG00000036832 191.54 1435.91 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
80. rpl9 ENSDARG00000037350, ENSDARG00000112384 189.32 1419.27 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
81. apoa1a ENSDARG00000012076, ENSDARG00000110395 188.20 1410.87 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
82. rps26l ENSDARG00000030408 188.20 1410.87 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
83. id1 ENSDARG00000040764 187.09 1402.55 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
84. smyhc1 ENSDARG00000099959, ENSDARG00000115916 185.98 1394.23 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
85. rpl19 ENSDARG00000013307 184.86 1385.83 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
86. rpl36a ENSDARG00000058105, ENSDARG00000112656 184.86 1385.83 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
87. rpsa ENSDARG00000019181 182.63 1369.12 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
88. rps15 ENSDARG00000070849, ENSDARG00000110979 170.38 1277.28 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
89. tmem38a ENSDARG00000024047 169.27 1268.96 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
90. COX5B_1 ENSDARG00000015978 164.82 1235.60 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
91. rps2 ENSDARG00000077291 163.70 1227.20 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
92. krt8 ENSDARG00000058358, ENSDARG00000109279 160.36 1202.16 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
93. atp5a1 159.25 1193.84 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
94. rps20 ENSDARG00000036044 157.02 1177.13 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
95. apoeb ENSDARG00000040295 154.79 1160.41 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
96. mt-nd3 ENSDARG00000063914 154.79 1160.41 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
97. rpl5b ENSDARG00000015862, ENSDARG00000109661 154.79 1160.41 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
98. eif5a ENSDARG00000017235 153.68 1152.09 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
99. rps12 ENSDARG00000036875, ENSDARG00000115157 153.68 1152.09 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
100. rps19 ENSDARG00000030602 152.57 1143.77 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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