Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s41.

Sample reads: 133,384. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 21594.62 161897.59
2. tpma ENSDARG00000033683 4168.59 31252.45 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 4092.35 30680.87 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2294.70 17203.66 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
5. ckmb ENSDARG00000040565 2166.63 16243.50 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. mylz3 ENSDARG00000017441 1808.32 13557.20 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
7. tmsb4x ENSDARG00000077777 1369.20 10265.07 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
8. ckma ENSDARG00000035327, ENSDARG00000114671 1358.53 10185.07 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
9. mt-nd4 ENSDARG00000063917 1335.66 10013.61 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
10. mt-nd2 ENSDARG00000063899 1239.60 9293.44 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
11. myhz1.3 ENSDARG00000067997 1164.89 8733.33 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
12. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1140.49 8550.40 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
13. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1126.77 8447.54 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
14. mt-co2 ENSDARG00000063908 992.59 7441.57 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
15. acta1b ENSDARG00000055618 978.87 7338.71 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
16. mt-atp6 ENSDARG00000063911 957.52 7178.65 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
17. tnnt3a ENSDARG00000030270 939.23 7041.53 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
18. pvalb1 ENSDARG00000037789 873.66 6549.94 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
19. mt-co3 ENSDARG00000063912 814.20 6104.16 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
20. atp2a1 ENSDARG00000020574 811.15 6081.29 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
21. actc1b ENSDARG00000099197 751.69 5635.51 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
22. actb2 ENSDARG00000037870 678.50 5086.80 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
23. tnni2a.4 ENSDARG00000029069 632.76 4743.88 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
24. apoc1l apoc1l 596.17 4469.56
25. mt-nd1 ENSDARG00000063895 565.67 4240.90 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
26. si:dkey-151g10.6 si:dkey-151g10.6 542.80 4069.44
27. apoa2 ENSDARG00000015866 526.03 3943.71 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
28. acta1a ENSDARG00000036371 521.45 3909.38 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
29. tnnt3b ENSDARG00000068457 510.78 3829.38 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
30. eef1a1l1 ENSDARG00000020850 481.81 3612.19 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
31. ttna ttna 481.81 3612.19
32. mt-cyb ENSDARG00000063924 419.30 3143.55 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
33. actb1 ENSDARG00000037746, ENSDARG00000113649 417.77 3132.07 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
34. ttnb ttnb 410.15 3074.95
35. apoa1b ENSDARG00000101324 402.53 3017.82 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
36. btf3 ENSDARG00000035400, ENSDARG00000116462 379.66 2846.36 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
37. zgc:66286 zgc:66286 378.13 2834.89
38. ppiaa ENSDARG00000009212 376.61 2823.49 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
39. myhz2 ENSDARG00000012944 353.74 2652.03 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
40. col1a1a ENSDARG00000012405, ENSDARG00000116113 347.64 2606.30 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
41. mylpfb ENSDARG00000002589 336.96 2526.23 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
42. apobb apobb 332.39 2491.97
43. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 318.67 2389.11 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
44. aldoab ENSDARG00000034470 306.47 2297.64 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
45. hmga1a ENSDARG00000028335 300.37 2251.91 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
46. myl1 ENSDARG00000014196 292.75 2194.78 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
47. si:ch211-226o13.2 280.55 2103.32 si:ch211-226o13.2
48. zgc:112425 zgc:112425 265.30 1988.99
49. hspa8 ENSDARG00000068992, ENSDARG00000114726 260.73 1954.73 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
50. rpl23 ENSDARG00000053457 259.20 1943.26 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
51. rpl10a ENSDARG00000042905, ENSDARG00000115649 256.15 1920.39 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
52. rpl8 ENSDARG00000014867 250.05 1874.66 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
53. tpm3 ENSDARG00000005162 248.53 1863.26 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
54. rpl26 ENSDARG00000102317 243.96 1829.00 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
55. pkmb ENSDARG00000099860 240.91 1806.13 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
56. ptmab ENSDARG00000101766 240.91 1806.13 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
57. rps26l ENSDARG00000030408 240.91 1806.13 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
58. zgc:92533 zgc:92533 240.91 1806.13
59. rpl11 ENSDARG00000043509 233.28 1748.93 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
60. myl10 ENSDARG00000062592 231.76 1737.53 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
61. rpl21 ENSDARG00000010516, ENSDARG00000110263 225.66 1691.80 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
62. rps23 ENSDARG00000021838 225.66 1691.80 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
63. gapdh ENSDARG00000043457 222.61 1668.94 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
64. hbae3 ENSDARG00000079305 221.08 1657.46 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
65. rpl18a ENSDARG00000025073 221.08 1657.46 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
66. rps14 ENSDARG00000036629 219.56 1646.07 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
67. rpl9 ENSDARG00000037350, ENSDARG00000112384 216.51 1623.20 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
68. cfl1l ENSDARG00000012972 214.99 1611.81 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
69. rps27a ENSDARG00000032725, ENSDARG00000114059 213.46 1600.34 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
70. apoa1a ENSDARG00000012076, ENSDARG00000110395 207.36 1554.60 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
71. eef2b ENSDARG00000100371, ENSDARG00000109247 207.36 1554.60 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
72. pvalb4 ENSDARG00000024433 207.36 1554.60 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
73. rpl19 ENSDARG00000013307 207.36 1554.60 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
74. apoeb ENSDARG00000040295 205.84 1543.21 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
75. col1a1b ENSDARG00000035809 205.84 1543.21 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
76. rpl36a ENSDARG00000058105, ENSDARG00000112656 205.84 1543.21 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
77. atp5g3b 198.21 1486.01 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
78. rps19 ENSDARG00000030602 198.21 1486.01 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
79. rplp1 ENSDARG00000021864 189.07 1417.48 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
80. rpsa ENSDARG00000019181 189.07 1417.48 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
81. nme2b.2 ENSDARG00000099420 187.54 1406.01 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
82. rps4x ENSDARG00000014690 187.54 1406.01 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
83. rpl27 ENSDARG00000015128 184.49 1383.14 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
84. rplp2 ENSDARG00000101406 182.97 1371.75 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
85. cyt1l ENSDARG00000036832 178.39 1337.41 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
86. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 176.87 1326.02 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
87. ATP5B 175.34 1314.55 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
88. id1 ENSDARG00000040764 175.34 1314.55 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
89. icn ENSDARG00000009978 170.77 1280.28 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
90. gch2 ENSDARG00000099101 166.19 1245.95 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
91. ldb3b ENSDARG00000099974 164.67 1234.55 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
92. mt-co1 ENSDARG00000063905 164.67 1234.55 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
93. bhmt ENSDARG00000013430 163.15 1223.16 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
94. atp5g1 161.62 1211.69 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
95. rps9 ENSDARG00000011405, ENSDARG00000113248 161.62 1211.69 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
96. AC024175.17 AC024175.17 158.57 1188.82
97. rpl36 ENSDARG00000100588 158.57 1188.82 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
98. rps27.1 ENSDARG00000023298 158.57 1188.82 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
99. hbbe1.1 ENSDARG00000113599 155.52 1165.95 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
100. zgc:113413 zgc:113413 155.52 1165.95
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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