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Experiment Zebrafish_40hpf_whole_embryo2, section s40.

Sample reads: 133,413. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 17535.16 131435.61
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3784.59 28367.57 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 3381.55 25346.57 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckma ENSDARG00000035327, ENSDARG00000114671 2385.38 17879.73 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
5. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1908.01 14301.58 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
6. mylz3 ENSDARG00000017441 1749.37 13112.48 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
7. ckmb ENSDARG00000040565 1696.49 12716.12 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
8. atp2a1 ENSDARG00000020574 1141.95 8559.54 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
9. mt-nd4 ENSDARG00000063917 1129.09 8463.15 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
10. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1120.51 8398.84 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
11. mt-nd2 ENSDARG00000063899 1089.07 8163.18 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
12. actc1b ENSDARG00000099197 997.60 7477.56 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
13. tmsb4x ENSDARG00000077777 989.02 7413.25 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
14. actb2 ENSDARG00000037870 987.59 7402.53 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
15. apoc1l apoc1l 953.29 7145.43
16. mt-atp6 ENSDARG00000063911 951.86 7134.71 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
17. mt-co2 ENSDARG00000063908 946.15 7091.91 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
18. myhz1.3 ENSDARG00000067997 900.41 6749.07 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
19. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 898.98 6738.35 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
20. acta1b ENSDARG00000055618 888.98 6663.39 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
21. mt-co3 ENSDARG00000063912 878.97 6588.36 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
22. apoa1b ENSDARG00000101324 690.32 5174.33 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
23. pvalb1 ENSDARG00000037789 686.03 5142.17 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
24. tnnt3a ENSDARG00000030270 684.60 5131.45 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
25. apoa2 ENSDARG00000015866 654.58 4906.43 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
26. apobb apobb 623.14 4670.77
27. eef1a1l1 ENSDARG00000020850 620.28 4649.34 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
28. tnnt3b ENSDARG00000068457 547.39 4102.99 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
29. mt-nd1 ENSDARG00000063895 538.82 4038.75 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
30. acta1a ENSDARG00000036371 510.23 3824.45 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
31. mt-cyb ENSDARG00000063924 498.80 3738.78 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
32. actb1 ENSDARG00000037746, ENSDARG00000113649 471.64 3535.20 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
33. ttnb ttnb 463.07 3470.96
34. ttna ttna 460.21 3449.53
35. ppiaa ENSDARG00000009212 443.06 3320.98 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
36. tnni2a.4 ENSDARG00000029069 408.76 3063.88 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
37. mylpfb ENSDARG00000002589 390.18 2924.61 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
38. apoeb ENSDARG00000040295 387.32 2903.18 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
39. col1a1a ENSDARG00000012405, ENSDARG00000116113 365.88 2742.47 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
40. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 355.88 2667.52 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
41. btf3 ENSDARG00000035400, ENSDARG00000116462 354.45 2656.80 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
42. hmga1a ENSDARG00000028335 338.73 2538.97 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
43. si:ch211-226o13.2 331.58 2485.37 si:ch211-226o13.2
44. si:dkey-151g10.6 si:dkey-151g10.6 331.58 2485.37
45. zgc:66286 zgc:66286 320.15 2399.70
46. apoa1a ENSDARG00000012076, ENSDARG00000110395 313.00 2346.11 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
47. gapdh ENSDARG00000043457 304.42 2281.79 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
48. zgc:112425 zgc:112425 290.13 2174.68
49. col1a1b ENSDARG00000035809 288.70 2163.96 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
50. hspa8 ENSDARG00000068992, ENSDARG00000114726 280.13 2099.73 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
51. rpl18a ENSDARG00000025073 278.70 2089.01 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
52. myhz2 ENSDARG00000012944 277.27 2078.29 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
53. AC024175.17 AC024175.17 275.84 2067.57
54. rpl8 ENSDARG00000014867 262.98 1971.18 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
55. mt-co1 ENSDARG00000063905 255.83 1917.59 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
56. ptmab ENSDARG00000101766 248.69 1864.07 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
57. eef2b ENSDARG00000100371, ENSDARG00000109247 247.26 1853.35 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
58. rpl10a ENSDARG00000042905, ENSDARG00000115649 244.40 1831.91 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
59. myl1 ENSDARG00000014196 240.11 1799.76 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
60. rpl26 ENSDARG00000102317 237.25 1778.32 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
61. rplp1 ENSDARG00000021864 237.25 1778.32 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
62. myl10 ENSDARG00000062592 235.82 1767.60 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
63. cfl1l ENSDARG00000012972 231.53 1735.44 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
64. aldoab ENSDARG00000034470 227.25 1703.36 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
65. pkmb ENSDARG00000099860 227.25 1703.36 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
66. cyt1l ENSDARG00000036832 224.39 1681.93 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
67. rpl11 ENSDARG00000043509 222.96 1671.21 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
68. tpm3 ENSDARG00000005162 218.67 1639.05 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
69. ATP5B 212.95 1596.18 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
70. rpl23 ENSDARG00000053457 210.10 1574.81 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
71. rps23 ENSDARG00000021838 210.10 1574.81 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
72. rpsa ENSDARG00000019181 210.10 1574.81 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
73. rps14 ENSDARG00000036629 204.38 1531.94 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
74. zgc:161979_1 zgc:161979_1 201.52 1510.50
75. zgc:92533 zgc:92533 201.52 1510.50
76. rps26l ENSDARG00000030408 200.09 1499.78 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
77. rpl19 ENSDARG00000013307 198.66 1489.07 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
78. bhmt ENSDARG00000013430 197.23 1478.35 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
79. atp5g3b 195.80 1467.63 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
80. rpl36a ENSDARG00000058105, ENSDARG00000112656 195.80 1467.63 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
81. col2a1a ENSDARG00000069093, ENSDARG00000111202 187.23 1403.39 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
82. tmem38a ENSDARG00000024047 187.23 1403.39 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
83. nme2b.2 ENSDARG00000099420 185.80 1392.67 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
84. rps6 ENSDARG00000019778 184.37 1381.95 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
85. fabp3 ENSDARG00000023290 181.51 1360.52 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
86. fkbp1aa ENSDARG00000022684 177.22 1328.36 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
87. pvalb4 ENSDARG00000024433 177.22 1328.36 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
88. gch2 ENSDARG00000099101 174.37 1307.00 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
89. rpl9 ENSDARG00000037350, ENSDARG00000112384 174.37 1307.00 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
90. pabpc1a ENSDARG00000017219 171.51 1285.56 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
91. rpl5b ENSDARG00000015862, ENSDARG00000109661 171.51 1285.56 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
92. rps27a ENSDARG00000032725, ENSDARG00000114059 167.22 1253.41 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
93. rpl7 ENSDARG00000007320 162.93 1221.25 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
94. si:dkeyp-113d7.4 si:dkeyp-113d7.4 161.50 1210.53
95. apoa4 apoa4 160.07 1199.81
96. col1a2 ENSDARG00000020007 160.07 1199.81 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
97. eif5a ENSDARG00000017235 160.07 1199.81 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
98. rplp0 ENSDARG00000051783 160.07 1199.81 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
99. rpl21 ENSDARG00000010516, ENSDARG00000110263 158.64 1189.09 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
100. rps2 ENSDARG00000077291 158.64 1189.09 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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