Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s39.

Sample reads: 133,410. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 11719.55 87845.81
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4311.90 32320.55 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 4041.03 30290.20 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckma ENSDARG00000035327, ENSDARG00000114671 2964.16 22218.35 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
5. ckmb ENSDARG00000040565 2569.37 19259.13 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. mylz3 ENSDARG00000017441 2242.58 16809.63 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
7. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2104.41 15773.95 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
8. mt-nd2 ENSDARG00000063899 1411.35 10579.01 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
9. atp2a1 ENSDARG00000020574 1398.19 10480.36 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
10. mt-atp6 ENSDARG00000063911 1374.06 10299.49 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
11. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1264.40 9477.52 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
12. tmsb4x ENSDARG00000077777 1164.61 8729.53 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
13. mt-co2 ENSDARG00000063908 1160.22 8696.62 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
14. mt-nd4 ENSDARG00000063917 1139.39 8540.48 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
15. actc1b ENSDARG00000099197 1080.17 8096.59 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
16. myhz1.3 ENSDARG00000067997 1040.69 7800.66 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
17. apoc1l apoc1l 1033.01 7743.10
18. mt-co3 ENSDARG00000063912 1000.11 7496.49 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. acta1b ENSDARG00000055618 994.63 7455.41 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
20. actb2 ENSDARG00000037870 979.28 7340.35 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
21. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 956.25 7167.73 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
22. apoa1b ENSDARG00000101324 923.35 6921.12 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
23. pvalb1 ENSDARG00000037789 876.20 6567.70 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
24. tnnt3a ENSDARG00000030270 723.77 5425.14 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
25. mt-nd1 ENSDARG00000063895 688.68 5162.11 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
26. apoa2 ENSDARG00000015866 648.10 4857.94 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
27. eef1a1l1 ENSDARG00000020850 628.36 4709.98 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
28. apobb apobb 617.40 4627.82
29. tnnt3b ENSDARG00000068457 596.56 4471.61 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
30. tnni2a.4 ENSDARG00000029069 573.53 4298.99 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
31. acta1a ENSDARG00000036371 566.95 4249.67 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
32. actb1 ENSDARG00000037746, ENSDARG00000113649 545.02 4085.29 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
33. mt-cyb ENSDARG00000063924 542.83 4068.87 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
34. si:dkey-151g10.6 si:dkey-151g10.6 493.48 3698.96
35. apoeb ENSDARG00000040295 492.38 3690.72 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
36. mylpfb ENSDARG00000002589 420.00 3148.18 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
37. si:ch211-226o13.2 396.98 2975.63 si:ch211-226o13.2
38. ppiaa ENSDARG00000009212 393.69 2950.97 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
39. ttna ttna 382.72 2868.74
40. col1a1a ENSDARG00000012405, ENSDARG00000116113 379.43 2844.08 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
41. myl1 ENSDARG00000014196 359.69 2696.12 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
42. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 355.30 2663.21 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
43. btf3 ENSDARG00000035400, ENSDARG00000116462 336.66 2523.49 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
44. hspa8 ENSDARG00000068992, ENSDARG00000114726 326.79 2449.51 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
45. zgc:66286 zgc:66286 323.50 2424.85
46. hmga1a ENSDARG00000028335 299.38 2244.05 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
47. apoa1a ENSDARG00000012076, ENSDARG00000110395 294.99 2211.15 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
48. rpl18a ENSDARG00000025073 293.89 2202.90 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
49. zgc:112425 zgc:112425 292.80 2194.73
50. rpl10a ENSDARG00000042905, ENSDARG00000115649 289.51 2170.07 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
51. rpl23 ENSDARG00000053457 282.93 2120.75 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
52. rpl8 ENSDARG00000014867 278.54 2087.84 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
53. gapdh ENSDARG00000043457 264.28 1980.95 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
54. ttnb ttnb 264.28 1980.95
55. zgc:92533 zgc:92533 260.99 1956.29
56. zgc:161979_1 zgc:161979_1 256.61 1923.46
57. eef2b ENSDARG00000100371, ENSDARG00000109247 254.42 1907.05 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
58. bhmt ENSDARG00000013430 251.13 1882.39 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
59. cfl1l ENSDARG00000012972 251.13 1882.39 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
60. fabp3 ENSDARG00000023290 250.03 1874.14 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
61. mt-co1 ENSDARG00000063905 250.03 1874.14 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
62. rpl9 ENSDARG00000037350, ENSDARG00000112384 246.74 1849.48 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
63. rpl26 ENSDARG00000102317 239.06 1791.91 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
64. rps23 ENSDARG00000021838 239.06 1791.91 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
65. col1a1b ENSDARG00000035809 233.58 1750.84 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
66. rpl21 ENSDARG00000010516, ENSDARG00000110263 230.29 1726.18 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
67. tpm3 ENSDARG00000005162 222.61 1668.61 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
68. myl10 ENSDARG00000062592 221.52 1660.44 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
69. atp5g3b 217.13 1627.53 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
70. rpl11 ENSDARG00000043509 213.84 1602.87 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
71. ATP5B 212.74 1594.63 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
72. nme2b.2 ENSDARG00000099420 211.65 1586.46 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
73. pkmb ENSDARG00000099860 211.65 1586.46 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
74. rpl19 ENSDARG00000013307 211.65 1586.46 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
75. zgc:161979 zgc:161979 211.65 1586.46
76. rps27a ENSDARG00000032725, ENSDARG00000114059 210.55 1578.21 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
77. rps14 ENSDARG00000036629 206.16 1545.31 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
78. myhz2 ENSDARG00000012944 202.87 1520.65 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
79. rpl36a ENSDARG00000058105, ENSDARG00000112656 201.78 1512.48 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
80. aldoab ENSDARG00000034470 197.39 1479.57 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
81. rplp1 ENSDARG00000021864 197.39 1479.57 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
82. rpsa ENSDARG00000019181 195.20 1463.15 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
83. ptmab ENSDARG00000101766 182.04 1364.51 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
84. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 177.65 1331.60 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
85. eif5a ENSDARG00000017235 176.56 1323.43 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
86. cyt1l ENSDARG00000036832 175.46 1315.19 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
87. rps26l ENSDARG00000030408 174.36 1306.94 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
88. rpl5b ENSDARG00000015862, ENSDARG00000109661 173.27 1298.77 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
89. krt8 ENSDARG00000058358, ENSDARG00000109279 172.17 1290.53 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
90. gch2 ENSDARG00000099101 171.07 1282.28 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
91. rps2 ENSDARG00000077291 171.07 1282.28 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
92. zgc:153129 zgc:153129 169.98 1274.11
93. pvalb4 ENSDARG00000024433 166.69 1249.45 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
94. rpl27 ENSDARG00000015128 166.69 1249.45 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
95. rplp0 ENSDARG00000051783 164.49 1232.96 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
96. rpl15 ENSDARG00000009285 163.40 1224.79 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
97. rps6 ENSDARG00000019778 163.40 1224.79 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
98. tmem38a ENSDARG00000024047 162.30 1216.55 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
99. ahcy ENSDARG00000005191 160.11 1200.13 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
100. pabpc1a ENSDARG00000017219 156.82 1175.47 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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