Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s37.

Sample reads: 133,383. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. tpma ENSDARG00000033683 4868.65 36501.32 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4321.56 32399.67 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. AC024175.4 AC024175.4 3411.82 25579.15
4. ckma ENSDARG00000035327, ENSDARG00000114671 3222.35 24158.65 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
5. ckmb ENSDARG00000040565 2871.00 21524.51 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. mylz3 ENSDARG00000017441 2607.49 19548.92 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
7. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2431.82 18231.88 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
8. actc1b ENSDARG00000099197 1898.52 14233.62 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
9. atp2a1 ENSDARG00000020574 1793.12 13443.41 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
10. acta1b ENSDARG00000055618 1530.87 11477.26 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
11. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1515.81 11364.36 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
12. mt-nd2 ENSDARG00000063899 1510.79 11326.72 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. mt-co2 ENSDARG00000063908 1394.09 10451.79 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
14. mt-nd4 ENSDARG00000063917 1382.80 10367.15 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
15. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1256.06 9416.95 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
16. myhz1.3 ENSDARG00000067997 1251.04 9379.32 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
17. actb2 ENSDARG00000037870 1126.82 8448.01 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
18. tmsb4x ENSDARG00000077777 1113.01 8344.48 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
19. mt-atp6 ENSDARG00000063911 1061.57 7958.82 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
20. mt-co3 ENSDARG00000063912 1051.53 7883.55 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
21. pvalb1 ENSDARG00000037789 957.42 7177.98 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
22. tnnt3a ENSDARG00000030270 922.28 6914.53 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
23. eef1a1l1 ENSDARG00000020850 836.96 6274.87 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
24. tnni2a.4 ENSDARG00000029069 823.15 6171.33 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
25. tnnt3b ENSDARG00000068457 752.88 5644.50 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
26. apoa1b ENSDARG00000101324 735.32 5512.85 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
27. mt-nd1 ENSDARG00000063895 690.14 5174.13 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
28. acta1a ENSDARG00000036371 685.13 5136.57 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
29. apoc1l apoc1l 683.87 5127.12
30. apoa2 ENSDARG00000015866 662.54 4967.21 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
31. apobb apobb 593.52 4449.75
32. myl1 ENSDARG00000014196 584.74 4383.92 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
33. mt-cyb ENSDARG00000063924 564.66 4233.38 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
34. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 535.80 4017.01 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
35. si:dkey-151g10.6 si:dkey-151g10.6 484.36 3631.35
36. mylpfb ENSDARG00000002589 469.30 3518.44 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
37. actb1 ENSDARG00000037746, ENSDARG00000113649 463.02 3471.36 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
38. si:ch211-226o13.2 463.02 3471.36 si:ch211-226o13.2
39. apoeb ENSDARG00000040295 421.62 3160.98 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
40. ttna ttna 419.11 3142.16
41. rpl10a ENSDARG00000042905, ENSDARG00000115649 410.32 3076.26 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
42. rpl23 ENSDARG00000053457 407.81 3057.44 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
43. ppiaa ENSDARG00000009212 402.79 3019.80 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
44. btf3 ENSDARG00000035400, ENSDARG00000116462 381.46 2859.89 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
45. zgc:66286 zgc:66286 380.21 2850.52
46. col1a1a ENSDARG00000012405, ENSDARG00000116113 372.68 2794.06 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
47. rpl8 ENSDARG00000014867 330.01 2474.16 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
48. eef2b ENSDARG00000100371, ENSDARG00000109247 326.25 2445.97 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
49. hspa8 ENSDARG00000068992, ENSDARG00000114726 325.00 2436.60 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
50. rpl9 ENSDARG00000037350, ENSDARG00000112384 314.96 2361.32 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
51. aldoab ENSDARG00000034470 313.70 2351.88 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
52. zgc:112425 zgc:112425 303.66 2276.60
53. rpl26 ENSDARG00000102317 287.35 2154.33 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
54. hmga1a ENSDARG00000028335 283.59 2126.14 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
55. mt-co1 ENSDARG00000063905 283.59 2126.14 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
56. rps27a ENSDARG00000032725, ENSDARG00000114059 283.59 2126.14 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
57. myl10 ENSDARG00000062592 281.08 2107.32 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
58. rps23 ENSDARG00000021838 281.08 2107.32 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
59. rpl21 ENSDARG00000010516, ENSDARG00000110263 279.82 2097.87 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
60. rpl36a ENSDARG00000058105, ENSDARG00000112656 276.06 2069.68 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
61. ptmab ENSDARG00000101766 274.80 2060.24 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
62. zgc:161979_1 zgc:161979_1 273.55 2050.86
63. gapdh ENSDARG00000043457 269.78 2022.60 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
64. rpl18a ENSDARG00000025073 268.53 2013.23 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
65. rps26l ENSDARG00000030408 268.53 2013.23 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
66. rpl11 ENSDARG00000043509 266.02 1994.41 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
67. zgc:92533 zgc:92533 266.02 1994.41
68. ATP5B 250.96 1881.50 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
69. nme2b.2 ENSDARG00000099420 249.71 1872.13 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
70. pkmb ENSDARG00000099860 249.71 1872.13 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
71. ttnb ttnb 247.20 1853.31
72. col1a1b ENSDARG00000035809 238.41 1787.41 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
73. apoa1a ENSDARG00000012076, ENSDARG00000110395 235.90 1768.59 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
74. rplp1 ENSDARG00000021864 234.65 1759.22 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
75. tpm3 ENSDARG00000005162 228.38 1712.21 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
76. cyt1l ENSDARG00000036832 227.12 1702.77 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
77. rpsa ENSDARG00000019181 225.87 1693.40 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
78. tmem38a ENSDARG00000024047 224.61 1683.95 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
79. cfl1l ENSDARG00000012972 223.36 1674.58 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
80. si:dkeyp-113d7.4 si:dkeyp-113d7.4 223.36 1674.58
81. bhmt ENSDARG00000013430 219.59 1646.31 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
82. rpl19 ENSDARG00000013307 219.59 1646.31 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
83. rps14 ENSDARG00000036629 217.08 1627.50 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
84. atp5a1 207.04 1552.22 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
85. rps2 ENSDARG00000077291 207.04 1552.22 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
86. rps20 ENSDARG00000036044 198.26 1486.40 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
87. rpl27 ENSDARG00000015128 197.00 1476.95 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
88. rps15 ENSDARG00000070849, ENSDARG00000110979 197.00 1476.95 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
89. rpl5b ENSDARG00000015862, ENSDARG00000109661 194.50 1458.21 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
90. ldb3b ENSDARG00000099974 190.73 1429.94 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
91. pvalb4 ENSDARG00000024433 185.71 1392.31 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
92. zgc:161979 zgc:161979 185.71 1392.31
93. hbae3 ENSDARG00000079305 183.20 1373.49 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
94. eif5a ENSDARG00000017235 181.95 1364.12 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
95. RPL29 ENSDARG00000077717 180.69 1354.67 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
96. rps6 ENSDARG00000019778 180.69 1354.67 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
97. rplp0 ENSDARG00000051783 179.44 1345.30 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
98. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 179.44 1345.30 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
99. atp5g3b 178.18 1335.85 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
100. rps5 ENSDARG00000043453 178.18 1335.85 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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