Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s34.

Sample reads: 133,406. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 11566.98 86705.16
2. tpma ENSDARG00000033683 4570.56 34260.55 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 3417.68 25618.66 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. pvalb2 ENSDARG00000002768, ENSDARG00000114085 3096.48 23210.97 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
5. mylz3 ENSDARG00000017441 2990.02 22412.95 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
6. ckma ENSDARG00000035327, ENSDARG00000114671 2943.61 22065.07 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. ckmb ENSDARG00000040565 2447.70 18347.76 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
8. atp2a1 ENSDARG00000020574 1855.34 13907.48 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
9. actc1b ENSDARG00000099197 1482.27 11110.98 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
10. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1373.08 10292.50 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
11. mt-nd2 ENSDARG00000063899 1347.60 10101.50 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
12. acta1b ENSDARG00000055618 1338.50 10033.29 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
13. mt-co2 ENSDARG00000063908 1273.90 9549.05 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
14. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1273.90 9549.05 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
15. mt-atp6 ENSDARG00000063911 1187.45 8901.03 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
16. mt-nd4 ENSDARG00000063917 1154.70 8655.54 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
17. pvalb1 ENSDARG00000037789 1050.05 7871.09 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
18. tmsb4x ENSDARG00000077777 1011.84 7584.67 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
19. mt-co3 ENSDARG00000063912 974.53 7305.00 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
20. apoc1l apoc1l 923.57 6923.01
21. actb2 ENSDARG00000037870 873.53 6547.91 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
22. myhz1.3 ENSDARG00000067997 824.39 6179.56 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
23. tnni2a.4 ENSDARG00000029069 784.36 5879.50 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
24. tnnt3a ENSDARG00000030270 783.45 5872.68 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
25. apoa1b ENSDARG00000101324 747.96 5606.65 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
26. eef1a1l1 ENSDARG00000020850 682.44 5115.52 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
27. tnnt3b ENSDARG00000068457 677.89 5081.41 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
28. mt-nd1 ENSDARG00000063895 634.22 4754.06 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
29. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 616.93 4624.46 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
30. acta1a ENSDARG00000036371 591.45 4433.46 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
31. apoa2 ENSDARG00000015866 582.35 4365.25 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
32. mt-cyb ENSDARG00000063924 575.98 4317.50 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
33. apobb apobb 561.42 4208.36
34. ttna ttna 539.59 4044.72
35. si:dkey-151g10.6 si:dkey-151g10.6 509.56 3819.62
36. si:ch211-226o13.2 508.65 3812.80 si:ch211-226o13.2
37. actb1 ENSDARG00000037746, ENSDARG00000113649 436.76 3273.92 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
38. mylpfb ENSDARG00000002589 428.57 3212.53 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
39. myl1 ENSDARG00000014196 406.74 3048.89 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
40. ppiaa ENSDARG00000009212 406.74 3048.89 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
41. col1a1a ENSDARG00000012405, ENSDARG00000116113 376.71 2823.79 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
42. apoeb ENSDARG00000040295 363.06 2721.47 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
43. ttnb ttnb 363.06 2721.47
44. btf3 ENSDARG00000035400, ENSDARG00000116462 327.57 2455.44 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
45. rpl10a ENSDARG00000042905, ENSDARG00000115649 319.38 2394.05 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
46. col1a1b ENSDARG00000035809 304.83 2284.98 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
47. hmga1a ENSDARG00000028335 303.92 2278.16 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
48. zgc:66286 zgc:66286 295.73 2216.77
49. zgc:112425 zgc:112425 293.00 2196.30
50. aldoab ENSDARG00000034470 287.54 2155.38 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
51. eef2b ENSDARG00000100371, ENSDARG00000109247 286.63 2148.56 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
52. hspa8 ENSDARG00000068992, ENSDARG00000114726 286.63 2148.56 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
53. rpl8 ENSDARG00000014867 285.72 2141.73 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
54. gapdh ENSDARG00000043457 282.08 2114.45 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
55. rpl18a ENSDARG00000025073 279.35 2093.99 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
56. pkmb ENSDARG00000099860 274.80 2059.88 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
57. ptmab ENSDARG00000101766 267.52 2005.31 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
58. zgc:92533 zgc:92533 266.61 1998.49
59. nme2b.2 ENSDARG00000099420 265.70 1991.67 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
60. apoa1a ENSDARG00000012076, ENSDARG00000110395 261.15 1957.56 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
61. zgc:161979_1 zgc:161979_1 256.60 1923.45
62. mt-co1 ENSDARG00000063905 245.68 1841.60 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
63. rpl23 ENSDARG00000053457 236.58 1773.38 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
64. col2a1a ENSDARG00000069093, ENSDARG00000111202 234.76 1759.74 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
65. rps23 ENSDARG00000021838 232.94 1746.10 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
66. ATP5B 230.21 1725.64 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
67. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 229.30 1718.81 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
68. rpl19 ENSDARG00000013307 220.20 1650.60 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
69. myhz1.2 ENSDARG00000067995 214.74 1609.67 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
70. rpl9 ENSDARG00000037350, ENSDARG00000112384 209.28 1568.75 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
71. tpm3 ENSDARG00000005162 206.55 1548.28 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
72. rpl11 ENSDARG00000043509 203.82 1527.82 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
73. rpl26 ENSDARG00000102317 202.00 1514.18 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
74. rpl21 ENSDARG00000010516, ENSDARG00000110263 200.18 1500.53 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
75. bhmt ENSDARG00000013430 199.27 1493.71 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
76. rps27a ENSDARG00000032725, ENSDARG00000114059 195.63 1466.43 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
77. rps14 ENSDARG00000036629 191.08 1432.32 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
78. tmem38a ENSDARG00000024047 187.44 1405.04 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
79. rps26l ENSDARG00000030408 182.90 1371.00 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
80. atp5g3b 181.08 1357.36 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
81. hbae3 ENSDARG00000079305 180.17 1350.54 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
82. rpl36a ENSDARG00000058105, ENSDARG00000112656 180.17 1350.54 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
83. rpsa ENSDARG00000019181 180.17 1350.54 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
84. cyt1l ENSDARG00000036832 177.44 1330.08 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
85. apoa4 apoa4 175.62 1316.43
86. rplp0 ENSDARG00000051783 170.16 1275.51 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
87. rps15 ENSDARG00000070849, ENSDARG00000110979 170.16 1275.51 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
88. rps20 ENSDARG00000036044 170.16 1275.51 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
89. rps2 ENSDARG00000077291 168.34 1261.86 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
90. eif5a ENSDARG00000017235 162.88 1220.94 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
91. myl10 ENSDARG00000062592 162.88 1220.94 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
92. slc25a4 ENSDARG00000027355, ENSDARG00000112318 161.97 1214.11 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5275]
93. cfl1l ENSDARG00000012972 160.15 1200.47 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
94. ldb3b ENSDARG00000099974 156.51 1173.19 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
95. rpl5b ENSDARG00000015862, ENSDARG00000109661 155.60 1166.37 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
96. col11a1a ENSDARG00000026165, ENSDARG00000115341 154.69 1159.54 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
97. pabpc1a ENSDARG00000017219 154.69 1159.54 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
98. pvalb4 ENSDARG00000024433 151.96 1139.08 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
99. si:dkeyp-113d7.4 si:dkeyp-113d7.4 151.96 1139.08
100. gch2 ENSDARG00000099101 151.05 1132.26 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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