Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s33.

Sample reads: 133,390. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 17991.98 134882.61
2. tpma ENSDARG00000033683 4702.73 35255.51 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 3391.28 25423.81 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2982.54 22359.56 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
5. ckmb ENSDARG00000040565 2490.02 18667.23 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. mylz3 ENSDARG00000017441 2485.69 18634.77 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
7. ckma ENSDARG00000035327, ENSDARG00000114671 2426.47 18190.80 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
8. actc1b ENSDARG00000099197 1853.07 13892.13 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
9. atp2a1 ENSDARG00000020574 1814.07 13599.75 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
10. acta1b ENSDARG00000055618 1334.56 10004.95 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
11. pvalb1 ENSDARG00000037789 1305.67 9788.37 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
12. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1229.12 9214.49 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
13. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1194.46 8954.65 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
14. tmsb4x ENSDARG00000077777 1168.46 8759.73 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
15. mt-nd4 ENSDARG00000063917 1106.35 8294.10 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
16. mt-nd2 ENSDARG00000063899 1021.14 7655.30 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
17. mt-co2 ENSDARG00000063908 983.59 7373.80 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
18. mt-atp6 ENSDARG00000063911 954.70 7157.21 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
19. mt-co3 ENSDARG00000063912 911.37 6832.38 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
20. tnnt3a ENSDARG00000030270 896.93 6724.12 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
21. tnni2a.4 ENSDARG00000029069 820.38 6150.24 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
22. actb2 ENSDARG00000037870 745.27 5587.15 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
23. myhz1.3 ENSDARG00000067997 733.72 5500.57 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
24. tnnt3b ENSDARG00000068457 675.95 5067.47 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
25. acta1a ENSDARG00000036371 648.50 4861.69 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
26. ttna ttna 628.28 4710.10
27. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 605.17 4536.85 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
28. si:dkey-151g10.6 si:dkey-151g10.6 551.73 4136.22
29. eef1a1l1 ENSDARG00000020850 543.07 4071.30 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
30. ttnb ttnb 524.29 3930.51
31. mt-cyb ENSDARG00000063924 511.29 3833.05 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
32. apoc1l apoc1l 504.07 3778.92
33. myl1 ENSDARG00000014196 495.40 3713.92 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
34. mt-nd1 ENSDARG00000063895 485.29 3638.13 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
35. apoa1b ENSDARG00000101324 482.41 3616.54 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
36. apoa2 ENSDARG00000015866 427.52 3205.04 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
37. mylpfb ENSDARG00000002589 408.74 3064.25 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
38. si:ch211-226o13.2 381.30 2858.54 si:ch211-226o13.2
39. actb1 ENSDARG00000037746, ENSDARG00000113649 362.53 2717.82 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
40. col1a1a ENSDARG00000012405, ENSDARG00000116113 355.30 2663.62 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
41. hmga1a ENSDARG00000028335 324.97 2436.24 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
42. apobb apobb 306.20 2295.53
43. nme2b.2 ENSDARG00000099420 296.09 2219.73 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
44. ppiaa ENSDARG00000009212 296.09 2219.73 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
45. gapdh ENSDARG00000043457 281.64 2111.40 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
46. col2a1a ENSDARG00000069093, ENSDARG00000111202 274.42 2057.28 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
47. zgc:112425 zgc:112425 274.42 2057.28
48. col1a1b ENSDARG00000035809 271.53 2035.61 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
49. zgc:66286 zgc:66286 271.53 2035.61
50. aldoab ENSDARG00000034470 268.64 2013.95 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
51. hspa8 ENSDARG00000068992, ENSDARG00000114726 264.31 1981.48 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
52. btf3 ENSDARG00000035400, ENSDARG00000116462 258.53 1938.15 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
53. ptmab ENSDARG00000101766 257.09 1927.36 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
54. rpl23 ENSDARG00000053457 257.09 1927.36 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
55. pkmb ENSDARG00000099860 255.65 1916.56 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
56. eef2b ENSDARG00000100371, ENSDARG00000109247 238.31 1786.57 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
57. zgc:92533 zgc:92533 226.76 1699.98
58. rpl8 ENSDARG00000014867 225.32 1689.18 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
59. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 222.43 1667.52 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
60. myhz1.2 ENSDARG00000067995 216.65 1624.19 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
61. rpl21 ENSDARG00000010516, ENSDARG00000110263 215.20 1613.32 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
62. apoeb ENSDARG00000040295 206.54 1548.39 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
63. rps23 ENSDARG00000021838 202.21 1515.93 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
64. ATP5B 199.32 1494.27 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
65. cyt1l ENSDARG00000036832 196.43 1472.60 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
66. myl10 ENSDARG00000062592 190.65 1429.27 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
67. rpl26 ENSDARG00000102317 190.65 1429.27 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
68. rpl36a ENSDARG00000058105, ENSDARG00000112656 187.76 1407.60 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
69. tpm3 ENSDARG00000005162 186.32 1396.81 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
70. rpl10a ENSDARG00000042905, ENSDARG00000115649 184.87 1385.94 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
71. rpl18a ENSDARG00000025073 183.43 1375.14 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
72. rpl9 ENSDARG00000037350, ENSDARG00000112384 180.54 1353.48 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
73. rpl11 ENSDARG00000043509 179.10 1342.68 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
74. mt-co1 ENSDARG00000063905 176.21 1321.01 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
75. rps14 ENSDARG00000036629 173.32 1299.35 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
76. rpl19 ENSDARG00000013307 171.87 1288.48 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
77. zgc:161979_1 zgc:161979_1 170.43 1277.68
78. pvalb4 ENSDARG00000024433 164.65 1234.35 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
79. rps2 ENSDARG00000077291 164.65 1234.35 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
80. pabpc1a ENSDARG00000017219 163.21 1223.56 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
81. fkbp1aa ENSDARG00000022684 160.32 1201.89 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
82. rplp1 ENSDARG00000021864 158.88 1191.09 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
83. col11a1a ENSDARG00000026165, ENSDARG00000115341 157.43 1180.22 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
84. id1 ENSDARG00000040764 157.43 1180.22 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
85. ldb3b ENSDARG00000099974 155.99 1169.43 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
86. rps27a ENSDARG00000032725, ENSDARG00000114059 155.99 1169.43 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
87. rps26l ENSDARG00000030408 154.54 1158.56 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
88. rplp2 ENSDARG00000101406 153.10 1147.76 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
89. apoa1a ENSDARG00000012076, ENSDARG00000110395 151.65 1136.89 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
90. col1a2 ENSDARG00000020007 150.21 1126.10 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
91. AC024175.17 AC024175.17 148.77 1115.30
92. atp5g3b 148.77 1115.30 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
93. eif5a ENSDARG00000017235 148.77 1115.30 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
94. rplp0 ENSDARG00000051783 148.77 1115.30 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
95. rpsa ENSDARG00000019181 148.77 1115.30 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
96. icn ENSDARG00000009978 144.43 1082.77 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
97. zgc:113413 zgc:113413 142.99 1071.97
98. bhmt ENSDARG00000013430 140.10 1050.30 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
99. krt8 ENSDARG00000058358, ENSDARG00000109279 138.66 1039.51 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
100. rps20 ENSDARG00000036044 138.66 1039.51 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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