Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s32.

Sample reads: 133,412. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 16782.45 125794.51
2. tpma ENSDARG00000033683 4346.74 32581.42 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 3868.57 28997.25 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. pvalb2 ENSDARG00000002768, ENSDARG00000114085 3348.81 25101.34 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
5. mylz3 ENSDARG00000017441 2893.03 21684.99 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
6. ckma ENSDARG00000035327, ENSDARG00000114671 2632.35 19731.04 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. ckmb ENSDARG00000040565 2099.80 15739.26 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
8. actc1b ENSDARG00000099197 1906.30 14288.86 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
9. atp2a1 ENSDARG00000020574 1837.53 13773.39 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
10. mt-nd4 ENSDARG00000063917 1509.68 11315.96 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
11. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1375.35 10309.07 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
12. mt-co2 ENSDARG00000063908 1340.16 10045.30 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
13. mt-nd2 ENSDARG00000063899 1306.58 9793.60 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
14. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1282.59 9613.78 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
15. pvalb1 ENSDARG00000037789 1279.39 9589.79 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
16. acta1b ENSDARG00000055618 1173.84 8798.63 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
17. mt-atp6 ENSDARG00000063911 1164.25 8726.75 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
18. tmsb4x ENSDARG00000077777 1089.08 8163.31 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
19. mt-co3 ENSDARG00000063912 1058.70 7935.59 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
20. tnnt3a ENSDARG00000030270 782.03 5861.78 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
21. actb2 ENSDARG00000037870 775.63 5813.81 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
22. tnnt3b ENSDARG00000068457 761.24 5705.95 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
23. mt-nd1 ENSDARG00000063895 700.47 5250.44 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
24. apoc1l apoc1l 682.88 5118.59
25. mt-cyb ENSDARG00000063924 670.08 5022.65 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
26. apoa1b ENSDARG00000101324 658.89 4938.78 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
27. ttna ttna 641.30 4806.93
28. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 601.32 4507.25 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
29. tnni2a.4 ENSDARG00000029069 591.72 4435.30 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
30. acta1a ENSDARG00000036371 570.93 4279.46 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
31. myhz1.3 ENSDARG00000067997 510.16 3823.95 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
32. apoa2 ENSDARG00000015866 486.17 3644.14 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
33. ttnb ttnb 484.57 3632.14
34. eef1a1l1 ENSDARG00000020850 455.78 3416.34 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
35. mylpfb ENSDARG00000002589 446.19 3344.46 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
36. si:dkey-151g10.6 si:dkey-151g10.6 403.01 3020.80
37. si:ch211-226o13.2 379.02 2840.98 si:ch211-226o13.2
38. col1a1a ENSDARG00000012405, ENSDARG00000116113 366.23 2745.11 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
39. myl1 ENSDARG00000014196 364.63 2733.12 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
40. actb1 ENSDARG00000037746, ENSDARG00000113649 356.63 2673.16 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
41. apobb apobb 345.44 2589.28
42. ppiaa ENSDARG00000009212 295.86 2217.65 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
43. btf3 ENSDARG00000035400, ENSDARG00000116462 278.27 2085.80 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
44. myhz1.2 ENSDARG00000067995 278.27 2085.80 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
45. col2a1a ENSDARG00000069093, ENSDARG00000111202 276.67 2073.81 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
46. rpl8 ENSDARG00000014867 273.47 2049.82 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
47. col1a1b ENSDARG00000035809 271.87 2037.83 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
48. aldoab ENSDARG00000034470 267.07 2001.85 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
49. hbae3 ENSDARG00000079305 267.07 2001.85 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
50. zgc:92533 zgc:92533 267.07 2001.85
51. hmga1a ENSDARG00000028335 265.47 1989.86 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
52. mt-co1 ENSDARG00000063905 260.68 1953.95 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
53. pkmb ENSDARG00000099860 260.68 1953.95 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
54. zgc:112425 zgc:112425 257.48 1929.97
55. gapdh ENSDARG00000043457 254.28 1905.98 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
56. eef2b ENSDARG00000100371, ENSDARG00000109247 252.68 1893.99 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
57. hspa8 ENSDARG00000068992, ENSDARG00000114726 249.48 1870.00 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
58. apoeb ENSDARG00000040295 246.28 1846.02 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
59. AC024175.17 AC024175.17 230.29 1726.16
60. rpl18a ENSDARG00000025073 228.69 1714.17 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
61. nme2b.2 ENSDARG00000099420 222.29 1666.20 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
62. ptmab ENSDARG00000101766 219.10 1642.29 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
63. zgc:66286 zgc:66286 211.10 1582.32
64. rpl26 ENSDARG00000102317 204.70 1534.35 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
65. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 204.70 1534.35 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
66. cyt1l ENSDARG00000036832 203.10 1522.36 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
67. bhmt ENSDARG00000013430 201.50 1510.36 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
68. rpl10a ENSDARG00000042905, ENSDARG00000115649 201.50 1510.36 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
69. ATP5B 198.31 1486.45 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
70. zgc:161979_1 zgc:161979_1 198.31 1486.45
71. rpl21 ENSDARG00000010516, ENSDARG00000110263 196.71 1474.46 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
72. rplp1 ENSDARG00000021864 196.71 1474.46 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
73. rps26l ENSDARG00000030408 195.11 1462.47 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
74. tpm3 ENSDARG00000005162 190.31 1426.49 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
75. apoa1a ENSDARG00000012076, ENSDARG00000110395 187.11 1402.50 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
76. atp5g3b 187.11 1402.50 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
77. rps14 ENSDARG00000036629 187.11 1402.50 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
78. rps23 ENSDARG00000021838 185.51 1390.51 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
79. id1 ENSDARG00000040764 182.31 1366.52 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
80. rps27a ENSDARG00000032725, ENSDARG00000114059 179.12 1342.61 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
81. cfl1l ENSDARG00000012972 177.52 1330.62 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
82. si:dkeyp-113d7.4 si:dkeyp-113d7.4 177.52 1330.62
83. rpsa ENSDARG00000019181 175.92 1318.63 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
84. rpl36a ENSDARG00000058105, ENSDARG00000112656 172.72 1294.64 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
85. rpl11 ENSDARG00000043509 171.12 1282.65 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
86. hbbe3 ENSDARG00000038147, ENSDARG00000109344 166.32 1246.67 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
87. col11a1a ENSDARG00000026165, ENSDARG00000115341 164.72 1234.68 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
88. rpl23 ENSDARG00000053457 161.52 1210.69 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
89. rps20 ENSDARG00000036044 161.52 1210.69 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
90. zgc:158463 ENSDARG00000089382 158.32 1186.70 zgc:158463 [Source:ZFIN;Acc:ZDB-GENE-070410-9]
91. tmem38a ENSDARG00000024047 156.73 1174.79 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
92. rps15 ENSDARG00000070849, ENSDARG00000110979 155.13 1162.79 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
93. mt-nd3 ENSDARG00000063914 153.53 1150.80 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
94. myl10 ENSDARG00000062592 153.53 1150.80 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
95. pabpc1a ENSDARG00000017219 153.53 1150.80 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
96. rpl5b ENSDARG00000015862, ENSDARG00000109661 151.93 1138.81 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
97. rpl9 ENSDARG00000037350, ENSDARG00000112384 151.93 1138.81 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
98. atp5g1 147.13 1102.83 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
99. rplp2 ENSDARG00000101406 145.53 1090.83 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
100. col1a2 ENSDARG00000020007 142.33 1066.85 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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