Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Zebrafish_40hpf_whole_embryo2, section s30.

Sample reads: 133,416. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 12384.06 92823.09
2. tpma ENSDARG00000033683 4344.21 32561.45 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 3422.45 25652.52 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. pvalb2 ENSDARG00000002768, ENSDARG00000114085 3265.42 24475.52 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
5. mylz3 ENSDARG00000017441 2866.38 21484.57 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
6. ckma ENSDARG00000035327, ENSDARG00000114671 2829.81 21210.47 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. ckmb ENSDARG00000040565 2651.27 19872.24 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
8. atp2a1 ENSDARG00000020574 1917.73 14374.09 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
9. actc1b ENSDARG00000099197 1689.71 12665.00 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
10. acta1b ENSDARG00000055618 1321.87 9907.90 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
11. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1235.82 9262.93 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
12. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1229.37 9214.58 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
13. mt-atp6 ENSDARG00000063911 1218.62 9134.01 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
14. mt-co2 ENSDARG00000063908 1206.78 9045.26 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
15. mt-nd2 ENSDARG00000063899 1158.38 8682.48 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
16. pvalb1 ENSDARG00000037789 1139.02 8537.37 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
17. mt-nd4 ENSDARG00000063917 1107.83 8303.59 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
18. tmsb4x ENSDARG00000077777 1097.08 8223.02 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
19. apoc1l apoc1l 1084.17 8126.25
20. mt-co3 ENSDARG00000063912 962.63 7215.27 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
21. actb2 ENSDARG00000037870 912.08 6836.38 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
22. apoa1b ENSDARG00000101324 879.81 6594.50 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
23. tnnt3a ENSDARG00000030270 814.20 6102.73 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
24. apoa2 ENSDARG00000015866 799.15 5989.92 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
25. apobb apobb 789.47 5917.37
26. tnnt3b ENSDARG00000068457 765.80 5739.95 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
27. tnni2a.4 ENSDARG00000029069 666.85 4998.29 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
28. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 593.71 4450.07 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
29. eef1a1l1 ENSDARG00000020850 590.49 4425.94 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
30. mt-nd1 ENSDARG00000063895 590.49 4425.94 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
31. mt-cyb ENSDARG00000063924 542.08 4063.09 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
32. myhz1.3 ENSDARG00000067997 534.56 4006.72 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
33. ttna ttna 495.84 3716.50
34. acta1a ENSDARG00000036371 488.31 3660.06 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
35. mylpfb ENSDARG00000002589 474.32 3555.20 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
36. si:ch211-226o13.2 445.28 3337.54 si:ch211-226o13.2
37. si:dkey-151g10.6 si:dkey-151g10.6 443.13 3321.42
38. actb1 ENSDARG00000037746, ENSDARG00000113649 438.83 3289.19 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
39. myl1 ENSDARG00000014196 427.00 3200.52 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
40. apoeb ENSDARG00000040295 399.03 2990.88 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
41. col1a1a ENSDARG00000012405, ENSDARG00000116113 388.28 2910.30 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
42. ttnb ttnb 374.30 2805.52
43. ppiaa ENSDARG00000009212 363.54 2724.87 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
44. rpl18a ENSDARG00000025073 330.20 2474.97 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
45. myhz1.2 ENSDARG00000067995 325.90 2442.74 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
46. hmga1a ENSDARG00000028335 303.31 2273.42 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
47. btf3 ENSDARG00000035400, ENSDARG00000116462 301.16 2257.31 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
48. eef2b ENSDARG00000100371, ENSDARG00000109247 292.55 2192.77 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
49. gapdh ENSDARG00000043457 289.33 2168.63 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
50. zgc:112425 zgc:112425 288.25 2160.54
51. rpl10a ENSDARG00000042905, ENSDARG00000115649 279.65 2096.08 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
52. apoa1a ENSDARG00000012076, ENSDARG00000110395 277.50 2079.96 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
53. zgc:161979_1 zgc:161979_1 275.34 2063.77
54. hspa8 ENSDARG00000068992, ENSDARG00000114726 272.12 2039.64 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
55. nme2b.2 ENSDARG00000099420 269.97 2023.52 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
56. zgc:92533 zgc:92533 269.97 2023.52
57. pkmb ENSDARG00000099860 265.66 1991.22 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
58. ptmab ENSDARG00000101766 261.36 1958.99 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
59. rpl23 ENSDARG00000053457 252.76 1894.53 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
60. col1a1b ENSDARG00000035809 248.46 1862.30 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
61. zgc:66286 zgc:66286 240.93 1805.86
62. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 239.85 1797.76 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
63. rps23 ENSDARG00000021838 236.62 1773.55 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
64. mt-co1 ENSDARG00000063905 231.25 1733.30 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
65. rpl8 ENSDARG00000014867 224.79 1684.88 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
66. rps26l ENSDARG00000030408 219.42 1644.63 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
67. rpl9 ENSDARG00000037350, ENSDARG00000112384 215.11 1612.33 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
68. bhmt ENSDARG00000013430 214.04 1604.31 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
69. ATP5B 207.58 1555.89 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
70. col2a1a ENSDARG00000069093, ENSDARG00000111202 202.21 1515.64 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
71. aldoab ENSDARG00000034470 200.06 1499.52 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
72. eif5a ENSDARG00000017235 195.75 1467.22 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
73. apoa4 apoa4 194.68 1459.20
74. pabpc1a ENSDARG00000017219 194.68 1459.20 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
75. rpl11 ENSDARG00000043509 194.68 1459.20 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
76. rpl21 ENSDARG00000010516, ENSDARG00000110263 194.68 1459.20 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
77. atp5g3b 188.22 1410.78 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
78. rpl26 ENSDARG00000102317 188.22 1410.78 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
79. rps27a ENSDARG00000032725, ENSDARG00000114059 186.07 1394.66 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
80. sepp1a 186.07 1394.66 selenoprotein P, plasma, 1a
81. rpl19 ENSDARG00000013307 174.24 1305.99 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
82. rpl36a ENSDARG00000058105, ENSDARG00000112656 171.01 1281.78 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
83. rpsa ENSDARG00000019181 171.01 1281.78 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
84. rplp1 ENSDARG00000021864 169.94 1273.76 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
85. rps14 ENSDARG00000036629 169.94 1273.76 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
86. tpm3 ENSDARG00000005162 169.94 1273.76 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
87. cyt1l ENSDARG00000036832 166.71 1249.55 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
88. krt8 ENSDARG00000058358, ENSDARG00000109279 165.64 1241.53 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
89. si:dkeyp-113d7.4 si:dkeyp-113d7.4 162.41 1217.32
90. cfl1l ENSDARG00000012972 158.11 1185.09 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
91. col11a1a ENSDARG00000026165, ENSDARG00000115341 158.11 1185.09 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
92. id1 ENSDARG00000040764 157.03 1177.00 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
93. rplp2 ENSDARG00000101406 155.96 1168.98 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
94. rplp0 ENSDARG00000051783 154.88 1160.88 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
95. rps15 ENSDARG00000070849, ENSDARG00000110979 152.73 1144.77 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
96. rps19 ENSDARG00000030602 152.73 1144.77 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
97. fkbp1aa ENSDARG00000022684 150.58 1128.65 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
98. rpl5b ENSDARG00000015862, ENSDARG00000109661 150.58 1128.65 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
99. tmem38a ENSDARG00000024047 149.50 1120.56 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
100. hbae3 ENSDARG00000079305 147.35 1104.44 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA