Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s29.

Sample reads: 133,418. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 8475.22 63523.78
2. tpma ENSDARG00000033683 4277.47 32060.65 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 3496.39 26206.27 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. ckma ENSDARG00000035327, ENSDARG00000114671 3009.95 22560.29 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
5. pvalb2 ENSDARG00000002768, ENSDARG00000114085 3007.63 22542.90 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
6. ckmb ENSDARG00000040565 2516.57 18862.29 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
7. mylz3 ENSDARG00000017441 2442.62 18308.02 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
8. atp2a1 ENSDARG00000020574 1916.89 14367.55 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
9. actc1b ENSDARG00000099197 1683.49 12618.16 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
10. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1409.65 10565.66 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
11. acta1b ENSDARG00000055618 1327.61 9950.75 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
12. mt-nd2 ENSDARG00000063899 1305.66 9786.23 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1223.62 9171.32 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
14. mt-nd4 ENSDARG00000063917 1117.32 8374.58 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
15. pvalb1 ENSDARG00000037789 1097.68 8227.37 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
16. mt-atp6 ENSDARG00000063911 980.98 7352.68 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
17. mt-co3 ENSDARG00000063912 979.82 7343.98 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. tmsb4x ENSDARG00000077777 968.27 7257.41 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
19. mt-co2 ENSDARG00000063908 901.25 6755.08 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
20. actb2 ENSDARG00000037870 880.45 6599.18 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
21. apoc1l apoc1l 870.05 6521.23
22. tnnt3a ENSDARG00000030270 814.59 6105.55 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
23. tnni2a.4 ENSDARG00000029069 766.06 5741.80 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
24. apoa2 ENSDARG00000015866 755.66 5663.85 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
25. eef1a1l1 ENSDARG00000020850 712.91 5343.43 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
26. apoa1b ENSDARG00000101324 693.27 5196.22 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
27. tnnt3b ENSDARG00000068457 660.92 4953.75 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
28. apobb apobb 659.76 4945.06
29. acta1a ENSDARG00000036371 638.96 4789.16 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
30. mt-nd1 ENSDARG00000063895 605.46 4538.07 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
31. myl1 ENSDARG00000014196 562.70 4217.57 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
32. myhz1.3 ENSDARG00000067997 559.24 4191.64 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
33. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 546.53 4096.37 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
34. si:dkey-151g10.6 si:dkey-151g10.6 538.44 4035.74
35. mt-cyb ENSDARG00000063924 513.02 3845.21 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
36. mylpfb ENSDARG00000002589 492.22 3689.31 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
37. si:ch211-226o13.2 461.02 3455.45 si:ch211-226o13.2
38. actb1 ENSDARG00000037746, ENSDARG00000113649 446.00 3342.88 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
39. ttna ttna 400.94 3005.14
40. myhz1.2 ENSDARG00000067995 396.32 2970.51 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
41. col1a1a ENSDARG00000012405, ENSDARG00000116113 392.85 2944.50 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
42. zgc:112425 zgc:112425 333.92 2502.81
43. ttnb ttnb 330.46 2476.88
44. btf3 ENSDARG00000035400, ENSDARG00000116462 325.84 2442.25 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
45. zgc:66286 zgc:66286 325.84 2442.25
46. apoeb ENSDARG00000040295 324.68 2433.55 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
47. hspa8 ENSDARG00000068992, ENSDARG00000114726 320.06 2398.93 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
48. ptmab ENSDARG00000101766 315.44 2364.30 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
49. col1a1b ENSDARG00000035809 309.66 2320.98 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
50. gapdh ENSDARG00000043457 299.26 2243.02 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
51. rpl23 ENSDARG00000053457 296.95 2225.71 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
52. ppiaa ENSDARG00000009212 291.17 2182.39 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
53. hmga1a ENSDARG00000028335 286.55 2147.76 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
54. mt-co1 ENSDARG00000063905 286.55 2147.76 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
55. rpl8 ENSDARG00000014867 286.55 2147.76 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
56. apoa1a ENSDARG00000012076, ENSDARG00000110395 284.24 2130.45 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
57. rpl10a ENSDARG00000042905, ENSDARG00000115649 279.62 2095.82 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
58. aldoab ENSDARG00000034470 265.75 1991.86 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
59. pkmb ENSDARG00000099860 264.60 1983.24 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
60. hbae3 ENSDARG00000079305 261.13 1957.23 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
61. ATP5B 257.67 1931.30 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
62. col2a1a ENSDARG00000069093, ENSDARG00000111202 246.11 1844.65 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
63. rpl9 ENSDARG00000037350, ENSDARG00000112384 242.64 1818.64 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
64. nme2b.2 ENSDARG00000099420 234.56 1758.08 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
65. tpm3 ENSDARG00000005162 233.40 1749.39 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
66. eef2b ENSDARG00000100371, ENSDARG00000109247 231.09 1732.07 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
67. zgc:161979_1 zgc:161979_1 228.78 1714.76
68. rpl26 ENSDARG00000102317 226.47 1697.45 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
69. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 218.38 1636.81 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
70. rpl11 ENSDARG00000043509 217.22 1628.12 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
71. cfl1l ENSDARG00000012972 216.07 1619.50 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
72. rpl18a ENSDARG00000025073 214.91 1610.80 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
73. rpl21 ENSDARG00000010516, ENSDARG00000110263 213.76 1602.18 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
74. rpl19 ENSDARG00000013307 212.60 1593.49 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
75. rps27a ENSDARG00000032725, ENSDARG00000114059 211.45 1584.87 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
76. rpl36a ENSDARG00000058105, ENSDARG00000112656 210.29 1576.17 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
77. rps26l ENSDARG00000030408 209.14 1567.55 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
78. tmem38a ENSDARG00000024047 204.51 1532.85 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
79. si:dkeyp-113d7.4 si:dkeyp-113d7.4 201.05 1506.92
80. myl10 ENSDARG00000062592 196.43 1472.29 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
81. rps23 ENSDARG00000021838 192.96 1446.28 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
82. bhmt ENSDARG00000013430 190.65 1428.97 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
83. pabpc1a ENSDARG00000017219 189.49 1420.27 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
84. rps14 ENSDARG00000036629 188.34 1411.65 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
85. sepp1a 188.34 1411.65 selenoprotein P, plasma, 1a
86. zgc:92533 zgc:92533 188.34 1411.65
87. rpsa ENSDARG00000019181 184.87 1385.64 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
88. RPL29 ENSDARG00000077717 183.72 1377.02 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
89. AC024175.17 AC024175.17 182.56 1368.33
90. gch2 ENSDARG00000099101 172.16 1290.38 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
91. ldb3b ENSDARG00000099974 172.16 1290.38 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
92. atp5g3b 171.01 1281.76 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
93. id1 ENSDARG00000040764 169.85 1273.07 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
94. apoa4 apoa4 165.23 1238.44
95. col9a1 col9a1 165.23 1238.44
96. rpl15 ENSDARG00000009285 165.23 1238.44 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
97. fabp3 ENSDARG00000023290 164.07 1229.74 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
98. hmgn2 ENSDARG00000099572 164.07 1229.74 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
99. pvalb4 ENSDARG00000024433 164.07 1229.74 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
100. rplp1 ENSDARG00000021864 161.76 1212.43 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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