Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s26.

Sample reads: 133,392. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 11866.23 88957.64
2. tpma ENSDARG00000033683 4237.16 31764.74 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. ckma ENSDARG00000035327, ENSDARG00000114671 4059.44 30432.43 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
4. krt4 ENSDARG00000017624, ENSDARG00000115790 3516.52 26362.32 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
5. pvalb2 ENSDARG00000002768, ENSDARG00000114085 3486.18 26134.87 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
6. mylz3 ENSDARG00000017441 2534.71 19001.98 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
7. ckmb ENSDARG00000040565 2418.76 18132.73 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
8. atp2a1 ENSDARG00000020574 2039.47 15289.31 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
9. actc1b ENSDARG00000099197 1844.41 13827.00 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
10. acta1b ENSDARG00000055618 1568.08 11755.43 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
11. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1435.87 10764.30 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
12. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1236.47 9269.45 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
13. pvalb1 ENSDARG00000037789 1215.88 9115.09 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
14. mt-nd2 ENSDARG00000063899 1140.02 8546.39 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
15. mt-nd4 ENSDARG00000063917 1066.33 7993.96 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
16. mt-co2 ENSDARG00000063908 956.88 7173.45 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
17. actb2 ENSDARG00000037870 935.21 7010.99 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
18. mt-atp6 ENSDARG00000063911 920.04 6897.27 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
19. mt-co3 ENSDARG00000063912 910.29 6824.18 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
20. tmsb4x ENSDARG00000077777 878.86 6588.55 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
21. apoa1b ENSDARG00000101324 800.83 6003.59 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
22. apoc1l apoc1l 779.16 5841.13
23. tnnt3a ENSDARG00000030270 775.91 5816.77 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
24. tnnt3b ENSDARG00000068457 771.58 5784.31 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
25. eef1a1l1 ENSDARG00000020850 681.63 5109.98 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
26. mylpfb ENSDARG00000002589 612.28 4590.08 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
27. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 604.69 4533.18 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
28. tnni2a.4 ENSDARG00000029069 598.19 4484.45 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
29. apoa2 ENSDARG00000015866 596.02 4468.19 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
30. acta1a ENSDARG00000036371 572.18 4289.47 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
31. mt-nd1 ENSDARG00000063895 540.75 4053.84 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
32. si:ch211-226o13.2 537.50 4029.48 si:ch211-226o13.2
33. myhz1.2 ENSDARG00000067995 495.24 3712.67 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
34. myl1 ENSDARG00000014196 489.82 3672.04 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
35. mt-cyb ENSDARG00000063924 476.82 3574.58 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
36. ttna ttna 472.48 3542.04
37. actb1 ENSDARG00000037746, ENSDARG00000113649 428.05 3208.96 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
38. apobb apobb 390.12 2924.61
39. ttnb ttnb 380.37 2851.52
40. si:dkey-151g10.6 si:dkey-151g10.6 364.11 2729.63
41. col1a1a ENSDARG00000012405, ENSDARG00000116113 361.95 2713.43 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
42. btf3 ENSDARG00000035400, ENSDARG00000116462 359.78 2697.16 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
43. apoeb ENSDARG00000040295 358.70 2689.07 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
44. ppiaa ENSDARG00000009212 358.70 2689.07 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
45. myhz1.3 ENSDARG00000067997 354.36 2656.53 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
46. apoa1a ENSDARG00000012076, ENSDARG00000110395 324.02 2429.08 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
47. nme2b.2 ENSDARG00000099420 287.17 2152.83 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
48. col1a1b ENSDARG00000035809 281.76 2112.27 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
49. hmga1a ENSDARG00000028335 281.76 2112.27 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
50. hspa8 ENSDARG00000068992, ENSDARG00000114726 277.42 2079.74 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
51. pkmb ENSDARG00000099860 276.34 2071.64 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
52. zgc:112425 zgc:112425 269.83 2022.84
53. rpl10a ENSDARG00000042905, ENSDARG00000115649 262.25 1966.01 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
54. gapdh ENSDARG00000043457 255.75 1917.28 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
55. mt-co1 ENSDARG00000063905 252.50 1892.92 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
56. zgc:161979_1 zgc:161979_1 247.08 1852.29
57. rpl23 ENSDARG00000053457 245.99 1844.11 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
58. hbae3 ENSDARG00000079305 242.74 1819.75 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
59. rpl21 ENSDARG00000010516, ENSDARG00000110263 242.74 1819.75 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
60. rpl8 ENSDARG00000014867 242.74 1819.75 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
61. bhmt ENSDARG00000013430 240.58 1803.56 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
62. zgc:66286 zgc:66286 240.58 1803.56
63. rpl36a ENSDARG00000058105, ENSDARG00000112656 239.49 1795.39 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
64. aldoab ENSDARG00000034470 229.74 1722.29 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
65. rpl26 ENSDARG00000102317 228.66 1714.20 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
66. zgc:92533 zgc:92533 227.57 1706.03
67. ptmab ENSDARG00000101766 226.49 1697.93 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
68. eef2b ENSDARG00000100371, ENSDARG00000109247 224.32 1681.66 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
69. rpl18a ENSDARG00000025073 221.07 1657.30 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
70. rpl11 ENSDARG00000043509 218.90 1641.03 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
71. myl10 ENSDARG00000062592 214.57 1608.57 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
72. ATP5B 212.40 1592.30 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
73. rps26l ENSDARG00000030408 212.40 1592.30 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
74. sepp1a 205.90 1543.57 selenoprotein P, plasma, 1a
75. rplp1 ENSDARG00000021864 197.23 1478.58 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
76. tmem38a ENSDARG00000024047 195.06 1462.31 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
77. rps23 ENSDARG00000021838 192.89 1446.04 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
78. fabp3 ENSDARG00000023290 191.81 1437.94 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
79. rpl9 ENSDARG00000037350, ENSDARG00000112384 189.64 1421.68 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
80. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 189.64 1421.68 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
81. col2a1a ENSDARG00000069093, ENSDARG00000111202 188.56 1413.58 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
82. rpsa ENSDARG00000019181 188.56 1413.58 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
83. eif5a ENSDARG00000017235 186.39 1397.31 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
84. pabpc1a ENSDARG00000017219 182.06 1364.85 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
85. rps14 ENSDARG00000036629 179.89 1348.58 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
86. atp5g3b 177.72 1332.31 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
87. hbbe3 ENSDARG00000038147, ENSDARG00000109344 176.64 1324.22 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
88. cfl1l ENSDARG00000012972 174.47 1307.95 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
89. cyt1l ENSDARG00000036832 174.47 1307.95 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
90. rps27a ENSDARG00000032725, ENSDARG00000114059 166.89 1251.13 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
91. rps2 ENSDARG00000077291 165.80 1242.95 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
92. tpm3 ENSDARG00000005162 164.72 1234.86 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
93. vdac2 ENSDARG00000013623 164.72 1234.86 voltage-dependent anion channel 2 [Source:ZFIN;Acc:ZDB-GENE-030131-845]
94. rpl5b ENSDARG00000015862, ENSDARG00000109661 161.47 1210.49 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
95. aldoaa ENSDARG00000011665 158.22 1186.13 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
96. col1a2 ENSDARG00000020007 156.05 1169.86 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
97. rps20 ENSDARG00000036044 154.97 1161.76 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
98. si:dkeyp-113d7.4 si:dkeyp-113d7.4 154.97 1161.76
99. hbbe1.1 ENSDARG00000113599 153.88 1153.59 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
100. rplp0 ENSDARG00000051783 153.88 1153.59 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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