Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s25.

Sample reads: 133,391. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 19264.61 144422.55
2. tpma ENSDARG00000033683 3623.97 27168.11 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 3184.20 23871.25 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2949.20 22109.50 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
5. ckma ENSDARG00000035327, ENSDARG00000114671 2925.83 21934.30 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
6. mylz3 ENSDARG00000017441 2130.13 15969.12 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
7. actc1b ENSDARG00000099197 1801.68 13506.80 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
8. ckmb ENSDARG00000040565 1746.71 13094.70 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
9. atp2a1 ENSDARG00000020574 1642.26 12311.66 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
10. acta1b ENSDARG00000055618 1137.90 8530.59 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
11. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1065.06 7984.52 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
12. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 975.74 7314.91 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
13. tmsb4x ENSDARG00000077777 970.24 7273.68 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
14. pvalb1 ENSDARG00000037789 926.26 6943.97 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
15. mt-nd2 ENSDARG00000063899 891.91 6686.45 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
16. mt-co2 ENSDARG00000063908 856.17 6418.52 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
17. mt-atp6 ENSDARG00000063911 839.68 6294.90 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
18. actb2 ENSDARG00000037870 821.82 6161.00 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
19. apoc1l apoc1l 780.59 5851.91
20. mt-co3 ENSDARG00000063912 766.85 5748.91 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
21. apoa1b ENSDARG00000101324 765.47 5738.56 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
22. mt-nd4 ENSDARG00000063917 755.85 5666.44 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
23. tnnt3a ENSDARG00000030270 625.30 4687.74 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
24. eef1a1l1 ENSDARG00000020850 600.56 4502.27 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
25. tnnt3b ENSDARG00000068457 560.70 4203.44 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
26. apoa2 ENSDARG00000015866 544.21 4079.82 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
27. tnni2a.4 ENSDARG00000029069 529.10 3966.55 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
28. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 513.98 3853.20 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
29. acta1a ENSDARG00000036371 476.87 3574.99 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
30. apobb apobb 459.01 3441.10
31. mt-cyb ENSDARG00000063924 446.64 3348.36 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
32. mylpfb ENSDARG00000002589 439.77 3296.86 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
33. ttna ttna 424.65 3183.51
34. actb1 ENSDARG00000037746, ENSDARG00000113649 420.53 3152.62 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
35. myl1 ENSDARG00000014196 406.79 3049.62 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
36. mt-nd1 ENSDARG00000063895 388.92 2915.65 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
37. myhz1.2 ENSDARG00000067995 388.92 2915.65 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
38. si:ch211-226o13.2 382.05 2864.14 si:ch211-226o13.2
39. apoeb ENSDARG00000040295 358.69 2689.02 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
40. zgc:112425 zgc:112425 342.19 2565.32
41. ppiaa ENSDARG00000009212 333.95 2503.55 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
42. hmga1a ENSDARG00000028335 329.83 2472.66 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
43. si:dkey-151g10.6 si:dkey-151g10.6 314.71 2359.31
44. ttnb ttnb 313.34 2349.04
45. apoa1a ENSDARG00000012076, ENSDARG00000110395 310.59 2328.42 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
46. nme2b.2 ENSDARG00000099420 309.21 2318.08 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
47. hspa8 ENSDARG00000068992, ENSDARG00000114726 296.84 2225.34 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
48. col1a1a ENSDARG00000012405, ENSDARG00000116113 295.47 2215.07 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
49. col2a1a ENSDARG00000069093, ENSDARG00000111202 284.48 2132.68 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
50. hbae3 ENSDARG00000079305 280.35 2101.72 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
51. btf3 ENSDARG00000035400, ENSDARG00000116462 269.36 2019.33 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
52. col1a1b ENSDARG00000035809 255.62 1916.33 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
53. rpl8 ENSDARG00000014867 255.62 1916.33 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
54. bhmt ENSDARG00000013430 251.49 1885.37 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
55. rpl10a ENSDARG00000042905, ENSDARG00000115649 247.37 1854.48 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
56. rpl23 ENSDARG00000053457 247.37 1854.48 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
57. zgc:161979_1 zgc:161979_1 247.37 1854.48
58. eef2b ENSDARG00000100371, ENSDARG00000109247 235.00 1761.74 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
59. myhz1.3 ENSDARG00000067997 235.00 1761.74 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
60. ATP5B 233.63 1751.47 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
61. rpl18a ENSDARG00000025073 225.38 1689.62 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
62. rpl26 ENSDARG00000102317 224.01 1679.35 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
63. rplp1 ENSDARG00000021864 215.76 1617.51 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
64. zgc:92533 zgc:92533 215.76 1617.51
65. gapdh ENSDARG00000043457 214.39 1607.23 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
66. zgc:66286 zgc:66286 211.64 1586.62
67. rpl21 ENSDARG00000010516, ENSDARG00000110263 208.89 1566.00 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
68. hbbe1.1 ENSDARG00000113599 206.14 1545.39 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
69. mt-co1 ENSDARG00000063905 204.77 1535.12 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
70. ptmab ENSDARG00000101766 202.02 1514.50 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
71. pkmb ENSDARG00000099860 196.52 1473.27 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
72. pabpc1a ENSDARG00000017219 195.15 1463.00 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
73. aldoab ENSDARG00000034470 192.40 1442.38 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
74. rpl36a ENSDARG00000058105, ENSDARG00000112656 188.28 1411.49 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
75. rpl11 ENSDARG00000043509 186.90 1401.15 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
76. AL954137.2 ENSDARG00000114408 180.03 1349.65
77. rpl9 ENSDARG00000037350, ENSDARG00000112384 177.28 1329.03 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
78. rpsa ENSDARG00000019181 171.78 1287.80 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
79. rps23 ENSDARG00000021838 170.41 1277.53 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
80. id1 ENSDARG00000040764 169.04 1267.26 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
81. rps14 ENSDARG00000036629 167.66 1256.91 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
82. rps26l ENSDARG00000030408 166.29 1246.64 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
83. rps27a ENSDARG00000032725, ENSDARG00000114059 164.91 1236.29 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
84. sepp1a 163.54 1226.02 selenoprotein P, plasma, 1a
85. rps2 ENSDARG00000077291 162.16 1215.68 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
86. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 162.16 1215.68 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
87. zgc:161979 zgc:161979 162.16 1215.68
88. fkbp1aa ENSDARG00000022684 160.79 1205.41 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
89. tmem38a ENSDARG00000024047 160.79 1205.41 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
90. atp5g3b 159.42 1195.14 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
91. col1a2 ENSDARG00000020007 158.04 1184.79 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
92. cyt1l ENSDARG00000036832 158.04 1184.79 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
93. tpm3 ENSDARG00000005162 158.04 1184.79 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
94. myl10 ENSDARG00000062592 156.67 1174.52 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
95. si:dkeyp-113d7.4 si:dkeyp-113d7.4 156.67 1174.52
96. apoa4 apoa4 153.92 1153.90
97. ccng1 ENSDARG00000076667, ENSDARG00000110260 153.92 1153.90 cyclin G1 [Source:ZFIN;Acc:ZDB-GENE-020322-1]
98. eif5a ENSDARG00000017235 152.54 1143.56 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
99. rpl19 ENSDARG00000013307 152.54 1143.56 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
100. col9a1 col9a1 151.17 1133.29
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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