Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s23.

Sample reads: 133,394. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 25527.67 191370.98
2. krt4 ENSDARG00000017624, ENSDARG00000115790 5007.08 37536.13 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2476.06 18562.06 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2145.25 16082.10 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
5. apoa1b ENSDARG00000101324 1894.05 14198.95 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
6. apoc1l apoc1l 1880.60 14098.12
7. ckmb ENSDARG00000040565 1412.97 10592.48 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
8. ckma ENSDARG00000035327, ENSDARG00000114671 1323.26 9919.96 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
9. tmsb4x ENSDARG00000077777 1319.89 9894.70 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
10. apoa2 ENSDARG00000015866 1313.17 9844.32 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
11. mylz3 ENSDARG00000017441 1146.08 8591.71 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
12. mt-co2 ENSDARG00000063908 1018.24 7633.35 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
13. atp2a1 ENSDARG00000020574 965.53 7238.20 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
14. apobb apobb 948.71 7112.11
15. mt-co3 ENSDARG00000063912 879.18 6590.87 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
16. actb2 ENSDARG00000037870 874.70 6557.28 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
17. mt-atp6 ENSDARG00000063911 864.60 6481.57 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
18. mt-nd4 ENSDARG00000063917 835.45 6263.04 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
19. apoeb ENSDARG00000040295 816.38 6120.08 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
20. mt-nd2 ENSDARG00000063899 779.38 5842.71 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
21. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 777.13 5825.84 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
22. apoa1a ENSDARG00000012076, ENSDARG00000110395 767.04 5750.20 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
23. pvalb1 ENSDARG00000037789 727.79 5455.96 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
24. zgc:161979_1 zgc:161979_1 705.36 5287.81
25. tnnc2 ENSDARG00000070835, ENSDARG00000111155 642.57 4817.10 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
26. bhmt ENSDARG00000013430 593.22 4447.14 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
27. acta1b ENSDARG00000055618 585.37 4388.29 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
28. actc1b ENSDARG00000099197 584.25 4379.89 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
29. mt-cyb ENSDARG00000063924 522.57 3917.50 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
30. tnnt3a ENSDARG00000030270 500.15 3749.43 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
31. eef1a1l1 ENSDARG00000020850 478.84 3589.68 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
32. si:dkey-151g10.6 si:dkey-151g10.6 425.01 3186.13
33. apoa4 apoa4 421.65 3160.95
34. zgc:161979 zgc:161979 419.41 3144.15
35. ttna ttna 390.25 2925.55
36. mt-nd1 ENSDARG00000063895 382.40 2866.70 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
37. tnnt3b ENSDARG00000068457 377.91 2833.04 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
38. acta1a ENSDARG00000036371 371.19 2782.67 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
39. tnni2a.4 ENSDARG00000029069 370.06 2774.20 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
40. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 364.46 2732.21 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
41. myhz1.2 ENSDARG00000067995 362.21 2715.35 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
42. sepp1a 351.00 2631.31 selenoprotein P, plasma, 1a
43. hmga1a ENSDARG00000028335 337.54 2530.41 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
44. actb1 ENSDARG00000037746, ENSDARG00000113649 330.81 2479.95 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
45. zgc:112425 zgc:112425 326.33 2446.37
46. ttnb ttnb 291.57 2185.79
47. ppiaa ENSDARG00000009212 285.96 2143.73 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
48. mylpfb ENSDARG00000002589 282.59 2118.47 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
49. zgc:92533 zgc:92533 272.50 2042.83
50. si:dkey-150i13.2 ENSDARG00000071052 259.04 1941.92 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
51. eef2b ENSDARG00000100371, ENSDARG00000109247 246.71 1849.49 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
52. btf3 ENSDARG00000035400, ENSDARG00000116462 245.59 1841.09 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
53. hspa8 ENSDARG00000068992, ENSDARG00000114726 244.47 1832.70 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
54. ctsla ENSDARG00000007836 241.10 1807.43 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
55. pabpc1a ENSDARG00000017219 241.10 1807.43 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
56. si:ch211-226o13.2 214.19 1605.70 si:ch211-226o13.2
57. col1a1a ENSDARG00000012405, ENSDARG00000116113 211.95 1588.91 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
58. myl1 ENSDARG00000014196 209.70 1572.04 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
59. ptmab ENSDARG00000101766 205.22 1538.45 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
60. zgc:153129 zgc:153129 205.22 1538.45
61. col2a1a ENSDARG00000069093, ENSDARG00000111202 202.97 1521.59 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
62. col1a1b ENSDARG00000035809 192.88 1445.95 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
63. AC024175.17 AC024175.17 189.52 1420.76
64. gapdh ENSDARG00000043457 186.15 1395.49 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
65. apoc2 ENSDARG00000092155 185.03 1387.10 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
66. cyt1l ENSDARG00000036832 185.03 1387.10 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
67. rpl18a ENSDARG00000025073 182.79 1370.31 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
68. icn ENSDARG00000009978 179.42 1345.04 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
69. nme2b.2 ENSDARG00000099420 179.42 1345.04 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
70. rpl8 ENSDARG00000014867 179.42 1345.04 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
71. rpl11 ENSDARG00000043509 176.06 1319.85 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
72. rps27a ENSDARG00000032725, ENSDARG00000114059 176.06 1319.85 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
73. mt-co1 ENSDARG00000063905 174.94 1311.46 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
74. cfl1l ENSDARG00000012972 171.58 1286.27 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
75. rps23 ENSDARG00000021838 171.58 1286.27 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
76. rpl21 ENSDARG00000010516, ENSDARG00000110263 165.97 1244.21 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
77. rpl23 ENSDARG00000053457 164.85 1235.82 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
78. aldoab ENSDARG00000034470 161.48 1210.55 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
79. rpl26 ENSDARG00000102317 161.48 1210.55 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
80. rbp4 ENSDARG00000101199 159.24 1193.76 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
81. gamt ENSDARG00000070844, ENSDARG00000109945 154.75 1160.10 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
82. id1 ENSDARG00000040764 153.63 1151.70 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
83. rpl19 ENSDARG00000013307 152.51 1143.31 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
84. rplp1 ENSDARG00000021864 152.51 1143.31 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
85. rpl10a ENSDARG00000042905, ENSDARG00000115649 150.27 1126.52 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
86. si:dkeyp-113d7.4 si:dkeyp-113d7.4 150.27 1126.52
87. APOB APOB 148.03 1109.72
88. rps26l ENSDARG00000030408 146.90 1101.25 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
89. rps14 ENSDARG00000036629 143.54 1076.06 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
90. col11a1a ENSDARG00000026165, ENSDARG00000115341 142.42 1067.67 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
91. myhz1.3 ENSDARG00000067997 141.30 1059.27 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
92. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 141.30 1059.27 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
93. rpl36a ENSDARG00000058105, ENSDARG00000112656 137.93 1034.01 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
94. krt8 ENSDARG00000058358, ENSDARG00000109279 133.45 1000.42 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
95. rplp2 ENSDARG00000101406 131.20 983.56 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
96. pkmb ENSDARG00000099860 130.08 975.16 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
97. zgc:113413 zgc:113413 130.08 975.16
98. rpl9 ENSDARG00000037350, ENSDARG00000112384 126.72 949.97 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
99. zgc:66286 zgc:66286 126.72 949.97
100. eif5a ENSDARG00000017235 125.60 941.57 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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