Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s22.

Sample reads: 133,390. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 24865.83 186414.01
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4182.60 31356.09 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoc1l apoc1l 3524.96 26425.90
4. apoa1b ENSDARG00000101324 3052.55 22884.34 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
5. apobb apobb 2069.03 15511.09
6. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2050.27 15370.45 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
7. tpma ENSDARG00000033683 2049.10 15361.68 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
8. apoa2 ENSDARG00000015866 1795.89 13463.42 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
9. apoa1a ENSDARG00000012076, ENSDARG00000110395 1555.58 11661.86 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
10. apoeb ENSDARG00000040295 1328.16 9956.94 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
11. tmsb4x ENSDARG00000077777 1294.17 9702.13 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
12. ckmb ENSDARG00000040565 1232.04 9236.35 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
13. mylz3 ENSDARG00000017441 1210.94 9078.17 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
14. ckma ENSDARG00000035327, ENSDARG00000114671 1097.23 8225.71 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
15. bhmt ENSDARG00000013430 1066.75 7997.21 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
16. mt-co2 ENSDARG00000063908 943.66 7074.42 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
17. zgc:161979_1 zgc:161979_1 894.43 6705.36
18. atp2a1 ENSDARG00000020574 881.53 6608.65 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
19. actb2 ENSDARG00000037870 836.99 6274.74 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
20. mt-nd4 ENSDARG00000063917 757.28 5677.17 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
21. mt-co3 ENSDARG00000063912 739.69 5545.30 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
22. mt-nd2 ENSDARG00000063899 715.07 5360.73 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
23. mt-atp6 ENSDARG00000063911 705.70 5290.49 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
24. zgc:161979 zgc:161979 671.70 5035.60
25. actc1b ENSDARG00000099197 621.29 4657.68 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
26. pvalb1 ENSDARG00000037789 607.23 4552.28 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
27. acta1b ENSDARG00000055618 595.50 4464.34 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
28. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 588.47 4411.64 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
29. tnnc2 ENSDARG00000070835, ENSDARG00000111155 561.51 4209.52 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
30. apoa4 apoa4 515.79 3866.77
31. sepp1a 470.07 3524.02 selenoprotein P, plasma, 1a
32. eef1a1l1 ENSDARG00000020850 448.97 3365.84 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
33. si:dkey-151g10.6 si:dkey-151g10.6 438.42 3286.74
34. mt-cyb ENSDARG00000063924 427.87 3207.65 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
35. tnnt3a ENSDARG00000030270 378.64 2838.59 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
36. ctsla ENSDARG00000007836 368.09 2759.49 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
37. actb1 ENSDARG00000037746, ENSDARG00000113649 336.44 2522.22 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
38. tnnt3b ENSDARG00000068457 336.44 2522.22 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
39. mt-nd1 ENSDARG00000063895 331.75 2487.06 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
40. apoc2 ENSDARG00000092155 320.03 2399.20 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
41. myhz1.2 ENSDARG00000067995 320.03 2399.20 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
42. si:dkey-150i13.2 ENSDARG00000071052 320.03 2399.20 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
43. zgc:153129 zgc:153129 315.34 2364.04
44. ttna ttna 291.89 2188.24
45. tnni2a.4 ENSDARG00000029069 289.55 2170.70 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
46. AC024175.17 AC024175.17 277.82 2082.76
47. acta1a ENSDARG00000036371 260.24 1950.97 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
48. ppiaa ENSDARG00000009212 260.24 1950.97 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
49. zgc:92533 zgc:92533 259.07 1942.19
50. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 256.72 1924.58 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
51. gamt ENSDARG00000070844, ENSDARG00000109945 249.69 1871.87 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
52. APOB APOB 239.14 1792.78
53. pvalb9 ENSDARG00000071601, ENSDARG00000113946 236.80 1775.24 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
54. ttnb ttnb 236.80 1775.24
55. hmga1a ENSDARG00000028335 229.76 1722.46 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
56. tfa ENSDARG00000016771 229.76 1722.46 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
57. mylpfb ENSDARG00000002589 226.24 1696.07 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
58. hspa8 ENSDARG00000068992, ENSDARG00000114726 225.07 1687.30 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
59. mt-co1 ENSDARG00000063905 221.56 1660.99 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
60. ahcy ENSDARG00000005191 219.21 1643.37 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
61. pabpc1a ENSDARG00000017219 218.04 1634.60 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
62. zgc:112425 zgc:112425 209.83 1573.05
63. rbp4 ENSDARG00000101199 208.66 1564.28 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
64. btf3 ENSDARG00000035400, ENSDARG00000116462 207.49 1555.51 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
65. slc43a2b ENSDARG00000061120, ENSDARG00000117188 203.97 1529.12 solute carrier family 43 (amino acid system L transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-041212-6]
66. myl1 ENSDARG00000014196 201.63 1511.58 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
67. ptmab ENSDARG00000101766 201.63 1511.58 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
68. si:ch211-226o13.2 195.77 1467.65 si:ch211-226o13.2
69. rpl8 ENSDARG00000014867 193.42 1450.03 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
70. eef2b ENSDARG00000100371, ENSDARG00000109247 192.25 1441.26 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
71. paics ENSDARG00000033539 188.73 1414.87 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9762]
72. rpl26 ENSDARG00000102317 187.56 1406.10 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
73. gapdh ENSDARG00000043457 181.70 1362.17 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
74. aldob ENSDARG00000053684 179.35 1344.55 aldolase b, fructose-bisphosphate [Source:ZFIN;Acc:ZDB-GENE-030131-383]
75. cyt1l ENSDARG00000036832 177.01 1327.01 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
76. pla2g12b ENSDARG00000015662 175.84 1318.24 phospholipase A2, group XIIB [Source:ZFIN;Acc:ZDB-GENE-040426-2771]
77. col1a1a ENSDARG00000012405, ENSDARG00000116113 165.29 1239.15 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
78. rpl23 ENSDARG00000053457 164.12 1230.37 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
79. rps23 ENSDARG00000021838 162.94 1221.53 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
80. cfl1l ENSDARG00000012972 161.77 1212.76 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
81. rpl10a ENSDARG00000042905, ENSDARG00000115649 161.77 1212.76 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
82. rpl36a ENSDARG00000058105, ENSDARG00000112656 157.08 1177.60 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
83. rpl11 ENSDARG00000043509 155.91 1168.83 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
84. gatm ENSDARG00000036239 150.05 1124.89 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
85. nme2b.2 ENSDARG00000099420 150.05 1124.89 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
86. rpl18a ENSDARG00000025073 148.88 1116.12 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
87. rpl21 ENSDARG00000010516, ENSDARG00000110263 147.70 1107.28 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
88. col2a1a ENSDARG00000069093, ENSDARG00000111202 146.53 1098.51 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
89. icn ENSDARG00000009978 145.36 1089.73 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
90. npc2 ENSDARG00000090912 140.67 1054.57 Niemann-Pick disease, type C2 [Source:ZFIN;Acc:ZDB-GENE-021206-13]
91. prdx5 ENSDARG00000055064 140.67 1054.57 peroxiredoxin 5 [Source:ZFIN;Acc:ZDB-GENE-050522-159]
92. rps27a ENSDARG00000032725, ENSDARG00000114059 139.50 1045.80 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
93. rps14 ENSDARG00000036629 138.33 1037.03 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
94. dao.1 ENSDARG00000035602 133.64 1001.87 D-amino-acid oxidase, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050913-127]
95. rpl9 ENSDARG00000037350, ENSDARG00000112384 133.64 1001.87 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
96. rps26l ENSDARG00000030408 132.46 993.03 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
97. fetub ENSDARG00000053973 128.95 966.71 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
98. psap ENSDARG00000013968 128.95 966.71 prosaposin [Source:ZFIN;Acc:ZDB-GENE-020108-1]
99. rpl19 ENSDARG00000013307 128.95 966.71 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
100. rplp1 ENSDARG00000021864 128.95 966.71 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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