Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s21.

Sample reads: 133,389. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 15822.92 118622.70
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4427.33 33191.21 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoc1l apoc1l 2871.03 21523.80
4. apoa1b ENSDARG00000101324 2353.74 17645.73 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
5. tpma ENSDARG00000033683 2288.60 17157.38 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
6. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1949.64 14616.24 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
7. ckma ENSDARG00000035327, ENSDARG00000114671 1775.74 13312.53 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
8. apoa2 ENSDARG00000015866 1771.94 13284.04 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
9. apobb apobb 1672.66 12539.75
10. ckmb ENSDARG00000040565 1345.08 10083.92 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
11. mylz3 ENSDARG00000017441 1324.85 9932.26 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
12. apoa1a ENSDARG00000012076, ENSDARG00000110395 1233.15 9244.79 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
13. atp2a1 ENSDARG00000020574 1185.09 8884.49 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
14. tmsb4x ENSDARG00000077777 1168.02 8756.52 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
15. actb2 ENSDARG00000037870 992.85 7443.29 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
16. apoeb ENSDARG00000040295 990.95 7429.04 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
17. actc1b ENSDARG00000099197 961.23 7206.24 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
18. bhmt ENSDARG00000013430 856.88 6423.94 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
19. mt-co2 ENSDARG00000063908 829.69 6220.09 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
20. mt-nd2 ENSDARG00000063899 744.32 5580.09 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
21. zgc:161979_1 zgc:161979_1 740.52 5551.60
22. tnnc2 ENSDARG00000070835, ENSDARG00000111155 715.23 5362.00 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
23. acta1b ENSDARG00000055618 686.14 5143.92 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
24. mt-co3 ENSDARG00000063912 670.33 5025.39 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
25. mt-atp6 ENSDARG00000063911 667.80 5006.42 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
26. pvalb1 ENSDARG00000037789 653.25 4897.34 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
27. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 631.75 4736.16 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
28. ctsla ENSDARG00000007836 598.87 4489.66 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
29. eef1a1l1 ENSDARG00000020850 570.41 4276.30 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
30. zgc:161979 zgc:161979 558.40 4186.26
31. mt-nd4 ENSDARG00000063917 553.97 4153.05 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
32. sepp1a 497.06 3726.40 selenoprotein P, plasma, 1a
33. apoa4 apoa4 447.73 3356.58
34. actb1 ENSDARG00000037746, ENSDARG00000113649 433.82 3252.30 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
35. mt-cyb ENSDARG00000063924 398.40 2986.76 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
36. tnnt3a ENSDARG00000030270 388.28 2910.89 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
37. si:dkey-151g10.6 si:dkey-151g10.6 363.62 2726.02
38. mt-nd1 ENSDARG00000063895 351.61 2635.98 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
39. tnnt3b ENSDARG00000068457 349.71 2621.74 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
40. hbae3 ENSDARG00000079305 344.02 2579.08 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
41. myhz1.2 ENSDARG00000067995 337.69 2531.62 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
42. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 326.94 2451.03 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
43. zgc:112425 zgc:112425 326.31 2446.31
44. tnni2a.4 ENSDARG00000029069 313.03 2346.75 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
45. hspa8 ENSDARG00000068992, ENSDARG00000114726 308.60 2313.54 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
46. ppiaa ENSDARG00000009212 307.34 2304.09 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
47. acta1a ENSDARG00000036371 306.07 2294.57 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
48. hmga1a ENSDARG00000028335 301.65 2261.44 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
49. ttna ttna 287.74 2157.16
50. zgc:153129 zgc:153129 285.84 2142.91
51. zgc:92533 zgc:92533 275.09 2062.32
52. si:ch211-226o13.2 273.82 2052.80 si:ch211-226o13.2
53. si:dkey-150i13.2 ENSDARG00000071052 272.56 2043.35 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
54. pabpc1a ENSDARG00000017219 266.23 1995.90 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
55. ptmab ENSDARG00000101766 257.38 1929.55 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
56. mylpfb ENSDARG00000002589 254.22 1905.86 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
57. gamt ENSDARG00000070844, ENSDARG00000109945 251.69 1886.89 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
58. eef2b ENSDARG00000100371, ENSDARG00000109247 247.26 1853.68 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
59. myl1 ENSDARG00000014196 239.67 1796.78 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
60. apoc2 ENSDARG00000092155 239.04 1792.06 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
61. APOB APOB 229.56 1720.99
62. hbbe3 ENSDARG00000038147, ENSDARG00000109344 229.56 1720.99 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
63. cyt1l ENSDARG00000036832 228.92 1716.19 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
64. col1a1a ENSDARG00000012405, ENSDARG00000116113 227.03 1702.02 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
65. slc43a2b ENSDARG00000061120, ENSDARG00000117188 224.50 1683.05 solute carrier family 43 (amino acid system L transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-041212-6]
66. btf3 ENSDARG00000035400, ENSDARG00000116462 222.60 1668.81 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
67. col1a1b ENSDARG00000035809 205.53 1540.84 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
68. hbbe1.1 ENSDARG00000113599 204.89 1536.04 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
69. rpl21 ENSDARG00000010516, ENSDARG00000110263 201.10 1507.62 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
70. rpl23 ENSDARG00000053457 201.10 1507.62 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
71. AC024175.17 AC024175.17 197.30 1479.14
72. rpl8 ENSDARG00000014867 196.67 1474.41 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
73. mt-co1 ENSDARG00000063905 192.88 1446.00 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
74. rbp4 ENSDARG00000101199 187.19 1403.34 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
75. ttnb ttnb 185.29 1389.10
76. gapdh ENSDARG00000043457 184.02 1379.58 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
77. nme2b.2 ENSDARG00000099420 184.02 1379.58 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
78. icn ENSDARG00000009978 182.13 1365.41 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
79. pvalb9 ENSDARG00000071601, ENSDARG00000113946 181.49 1360.61 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
80. rpl26 ENSDARG00000102317 180.23 1351.16 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
81. ahcy ENSDARG00000005191 178.33 1336.92 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
82. cfl1l ENSDARG00000012972 178.33 1336.92 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
83. rpl9 ENSDARG00000037350, ENSDARG00000112384 175.80 1317.95 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
84. rps27a ENSDARG00000032725, ENSDARG00000114059 175.80 1317.95 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
85. tfa ENSDARG00000016771 175.80 1317.95 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
86. fn1b ENSDARG00000006526 171.38 1284.82 fibronectin 1b [Source:ZFIN;Acc:ZDB-GENE-030131-6545]
87. rpl10a ENSDARG00000042905, ENSDARG00000115649 171.38 1284.82 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
88. rpl11 ENSDARG00000043509 170.11 1275.30 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
89. paics ENSDARG00000033539 165.69 1242.16 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9762]
90. rps2 ENSDARG00000077291 163.79 1227.92 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
91. rpl18a ENSDARG00000025073 159.99 1199.43 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
92. dao.1 ENSDARG00000035602 157.46 1180.46 D-amino-acid oxidase, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050913-127]
93. zgc:113413 zgc:113413 157.46 1180.46
94. ATP5B 156.20 1171.01 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
95. rps23 ENSDARG00000021838 151.77 1137.80 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
96. aldob ENSDARG00000053684 151.14 1133.08 aldolase b, fructose-bisphosphate [Source:ZFIN;Acc:ZDB-GENE-030131-383]
97. si:dkeyp-113d7.4 si:dkeyp-113d7.4 149.24 1118.84
98. krt8 ENSDARG00000058358, ENSDARG00000109279 144.82 1085.70 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
99. rplp0 ENSDARG00000051783 143.55 1076.18 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
100. zgc:66286 zgc:66286 142.29 1066.73
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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