Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s20.

Sample reads: 133,420. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 16412.49 123013.85
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4166.97 31232.01 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoc1l apoc1l 2734.49 20495.37
4. apoa1b ENSDARG00000101324 2263.47 16965.02 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
5. tpma ENSDARG00000033683 2027.50 15196.39 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
6. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1940.52 14544.46 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
7. apobb apobb 1775.80 13309.86
8. apoa2 ENSDARG00000015866 1723.98 12921.46 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
9. ckma ENSDARG00000035327, ENSDARG00000114671 1616.63 12116.86 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
10. ckmb ENSDARG00000040565 1221.50 9155.31 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
11. tmsb4x ENSDARG00000077777 1197.44 8974.98 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
12. apoa1a ENSDARG00000012076, ENSDARG00000110395 1194.66 8954.14 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
13. mylz3 ENSDARG00000017441 1133.59 8496.41 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
14. apoeb ENSDARG00000040295 1073.44 8045.58 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
15. atp2a1 ENSDARG00000020574 1052.15 7886.01 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
16. hbae3 ENSDARG00000079305 1051.23 7879.11 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
17. actb2 ENSDARG00000037870 1045.68 7837.51 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
18. zgc:161979_1 zgc:161979_1 978.12 7331.14
19. mt-co2 ENSDARG00000063908 830.99 6228.38 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
20. actc1b ENSDARG00000099197 795.82 5964.78 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
21. bhmt ENSDARG00000013430 757.88 5680.41 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
22. hbbe3 ENSDARG00000038147, ENSDARG00000109344 756.96 5673.52 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
23. acta1b ENSDARG00000055618 727.35 5451.59 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
24. tnnc2 ENSDARG00000070835, ENSDARG00000111155 703.29 5271.25 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
25. mt-nd2 ENSDARG00000063899 692.18 5187.98 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
26. mt-nd4 ENSDARG00000063917 661.64 4959.08 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
27. mt-co3 ENSDARG00000063912 652.39 4889.75 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
28. hbbe1.1 ENSDARG00000113599 650.54 4875.89 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
29. mt-atp6 ENSDARG00000063911 636.66 4771.85 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
30. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 622.78 4667.82 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
31. ctsla ENSDARG00000007836 602.42 4515.22 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
32. zgc:161979 zgc:161979 589.47 4418.16
33. eef1a1l1 ENSDARG00000020850 584.84 4383.46 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
34. pvalb1 ENSDARG00000037789 568.18 4258.59 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
35. apoa4 apoa4 524.69 3932.62
36. actb1 ENSDARG00000037746, ENSDARG00000113649 480.27 3599.69 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
37. tnnt3b ENSDARG00000068457 406.24 3044.82 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
38. sepp1a 396.06 2968.52 selenoprotein P, plasma, 1a
39. tnnt3a ENSDARG00000030270 388.66 2913.06 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
40. mt-cyb ENSDARG00000063924 378.48 2836.76 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
41. hbbe1.1_1 ENSDARG00000113599 363.67 2725.76 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
42. mt-nd1 ENSDARG00000063895 357.20 2677.26 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
43. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 325.73 2441.39 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
44. si:dkey-151g10.6 si:dkey-151g10.6 313.70 2351.22
45. ttna ttna 307.23 2302.73
46. mylpfb ENSDARG00000002589 305.37 2288.79 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
47. si:dkey-150i13.2 ENSDARG00000071052 294.27 2205.59 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
48. myhz1.2 ENSDARG00000067995 288.72 2164.00 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
49. acta1a ENSDARG00000036371 285.94 2143.16 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
50. eef2b ENSDARG00000100371, ENSDARG00000109247 285.02 2136.26 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
51. zgc:112425 zgc:112425 285.02 2136.26
52. zgc:153129 zgc:153129 281.31 2108.46
53. hbae1_1 279.46 2094.59 hemoglobin, alpha embryonic 1
54. pabpc1a ENSDARG00000017219 277.61 2080.72 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
55. zgc:92533 zgc:92533 274.84 2059.96
56. ppiaa ENSDARG00000009212 272.99 2046.10 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
57. si:ch211-226o13.2 267.43 2004.42 si:ch211-226o13.2
58. hspa8 ENSDARG00000068992, ENSDARG00000114726 264.66 1983.66 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
59. ptmab ENSDARG00000101766 257.25 1928.12 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
60. tnni2a.4 ENSDARG00000029069 250.78 1879.63 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
61. APOB APOB 249.85 1872.66
62. gamt ENSDARG00000070844, ENSDARG00000109945 247.08 1851.90 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
63. hmga1a ENSDARG00000028335 243.37 1824.09 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
64. ttnb ttnb 241.52 1810.23
65. myl1 ENSDARG00000014196 237.82 1782.49 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
66. apoc2 ENSDARG00000092155 236.90 1775.60 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
67. AC024175.17 AC024175.17 227.64 1706.19
68. paics ENSDARG00000033539 218.39 1636.86 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9762]
69. rpl18a ENSDARG00000025073 215.61 1616.03 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
70. btf3 ENSDARG00000035400, ENSDARG00000116462 205.43 1539.73 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
71. nme2b.2 ENSDARG00000099420 201.73 1511.99 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
72. slc43a2b ENSDARG00000061120, ENSDARG00000117188 198.03 1484.26 solute carrier family 43 (amino acid system L transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-041212-6]
73. col1a1a ENSDARG00000012405, ENSDARG00000116113 194.33 1456.53 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
74. rpl8 ENSDARG00000014867 194.33 1456.53 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
75. fn1b ENSDARG00000006526 193.40 1449.56 fibronectin 1b [Source:ZFIN;Acc:ZDB-GENE-030131-6545]
76. tfa ENSDARG00000016771 188.78 1414.93 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
77. hbae1 186.93 1401.07 hemoglobin, alpha embryonic 1
78. rpl23 ENSDARG00000053457 186.93 1401.07 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
79. rplp1 ENSDARG00000021864 186.00 1394.10 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
80. cfl1l ENSDARG00000012972 183.22 1373.26 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
81. cyt1l ENSDARG00000036832 182.30 1366.36 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
82. rpl26 ENSDARG00000102317 181.37 1359.39 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
83. rps23 ENSDARG00000021838 177.67 1331.66 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
84. rbp4 ENSDARG00000101199 174.90 1310.90 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
85. gatm ENSDARG00000036239 169.34 1269.23 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
86. gapdh ENSDARG00000043457 167.49 1255.36 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
87. si:dkeyp-113d7.4 si:dkeyp-113d7.4 167.49 1255.36
88. mt-co1 ENSDARG00000063905 166.57 1248.46 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
89. col1a1b ENSDARG00000035809 163.79 1227.63 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
90. icn ENSDARG00000009978 163.79 1227.63 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
91. pvalb9 ENSDARG00000071601, ENSDARG00000113946 161.94 1213.76 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
92. rps26l ENSDARG00000030408 161.94 1213.76 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
93. eif5a ENSDARG00000017235 160.09 1199.90 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
94. rpl36a ENSDARG00000058105, ENSDARG00000112656 159.16 1192.93 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
95. rpl9 ENSDARG00000037350, ENSDARG00000112384 158.24 1186.03 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
96. ahcy ENSDARG00000005191 157.31 1179.06 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
97. rpl11 ENSDARG00000043509 157.31 1179.06 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
98. rpl10a ENSDARG00000042905, ENSDARG00000115649 151.76 1137.46 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
99. rps27a ENSDARG00000032725, ENSDARG00000114059 150.84 1130.57 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
100. aldob ENSDARG00000053684 148.99 1116.70 aldolase b, fructose-bisphosphate [Source:ZFIN;Acc:ZDB-GENE-030131-383]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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