Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s2.

Sample reads: 133,412. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 15732.50 117924.33
2. krt4 ENSDARG00000017624, ENSDARG00000115790 14154.04 106092.84 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 1578.46 11831.48 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. actb2 ENSDARG00000037870 1459.33 10938.54 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
5. zgc:92533 zgc:92533 1451.89 10882.77
6. actb1 ENSDARG00000037746, ENSDARG00000113649 1295.53 9710.76 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
7. icn ENSDARG00000009978 1198.74 8985.26 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
8. si:ch211-117m20.5 ENSDARG00000091996 1109.39 8315.53 si:ch211-117m20.5 [Source:ZFIN;Acc:ZDB-GENE-030131-12]
9. col1a1a ENSDARG00000012405, ENSDARG00000116113 848.80 6362.25 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
10. cfl1l ENSDARG00000012972 826.46 6194.80 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
11. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 774.34 5804.13 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
12. zgc:165571 zgc:165571 752.00 5636.68
13. cyt1l ENSDARG00000036832 744.56 5580.91 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
14. eef1a1l1 ENSDARG00000020850 684.99 5134.40 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
15. icn2 ENSDARG00000055514 506.30 3795.02 ictacalcin 2 [Source:ZFIN;Acc:ZDB-GENE-070822-9]
16. si:dkey-151g10.6 si:dkey-151g10.6 491.41 3683.41
17. gch2 ENSDARG00000099101 483.96 3627.56 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
18. ptmab ENSDARG00000101766 483.96 3627.56 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
19. mt-co2 ENSDARG00000063908 461.63 3460.19 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
20. pabpc1a ENSDARG00000017219 461.63 3460.19 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
21. hmga1a ENSDARG00000028335 454.18 3404.35 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
22. mt-nd2 ENSDARG00000063899 454.18 3404.35 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
23. hspa8 ENSDARG00000068992, ENSDARG00000114726 409.51 3069.52 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
24. zgc:113413 zgc:113413 409.51 3069.52
25. pfn1 ENSDARG00000088091 402.06 3013.68 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
26. ppiaa ENSDARG00000009212 387.17 2902.07 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
27. col1a1b ENSDARG00000035809 379.72 2846.22 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
28. mt-nd4 ENSDARG00000063917 379.72 2846.22 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
29. zgc:112425 zgc:112425 372.28 2790.46
30. eef2b ENSDARG00000100371, ENSDARG00000109247 349.94 2623.01 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
31. zgc:153129 zgc:153129 342.50 2567.24
32. id1 ENSDARG00000040764 327.61 2455.63 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
33. rpl8 ENSDARG00000014867 327.61 2455.63 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
34. mt-co3 ENSDARG00000063912 320.16 2399.79 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
35. rplp1 ENSDARG00000021864 320.16 2399.79 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
36. serp1 ENSDARG00000099439 297.82 2232.34 stress-associated endoplasmic reticulum protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8741]
37. tnw 297.82 2232.34 tenascin W, transcript variant X2
38. col1a2 ENSDARG00000020007 282.93 2120.73 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
39. im:7150988 ENSDARG00000109310 282.93 2120.73 im:7150988 [Source:ZFIN;Acc:ZDB-GENE-050309-169]
40. krt5 ENSDARG00000058371, ENSDARG00000112017 282.93 2120.73 keratin 5 [Source:ZFIN;Acc:ZDB-GENE-991110-23]
41. krt8 ENSDARG00000058358, ENSDARG00000109279 275.49 2064.96 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
42. myl12.1 ENSDARG00000099766 275.49 2064.96 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
43. rpl11 ENSDARG00000043509 275.49 2064.96 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
44. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 268.04 2009.12 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
45. anxa1a ENSDARG00000026726 260.60 1953.35 annexin A1a [Source:ZFIN;Acc:ZDB-GENE-030131-6664]
46. rpl19 ENSDARG00000013307 260.60 1953.35 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
47. rpl9 ENSDARG00000037350, ENSDARG00000112384 260.60 1953.35 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
48. rps27a ENSDARG00000032725, ENSDARG00000114059 260.60 1953.35 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
49. mt-atp6 ENSDARG00000063911 253.15 1897.51 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
50. eif5a ENSDARG00000017235 238.26 1785.90 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
51. hsp90ab1 ENSDARG00000029150 238.26 1785.90 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
52. rpl10a ENSDARG00000042905, ENSDARG00000115649 238.26 1785.90 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
53. rpl23 ENSDARG00000053457 238.26 1785.90 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
54. rps14 ENSDARG00000036629 238.26 1785.90 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
55. rps26l ENSDARG00000030408 238.26 1785.90 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
56. CU914813.1 CU914813.1 230.81 1730.06
57. rpl18a ENSDARG00000025073 230.81 1730.06 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
58. fkbp1aa ENSDARG00000022684 223.37 1674.29 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
59. rpl36a ENSDARG00000058105, ENSDARG00000112656 223.37 1674.29 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
60. ywhabl ENSDARG00000040287 223.37 1674.29 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like [Source:ZFIN;Acc:ZDB-GENE-030131-448]
61. zgc:92061 zgc:92061 223.37 1674.29
62. rpl21 ENSDARG00000010516, ENSDARG00000110263 215.92 1618.45 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
63. si:ch1073-429i10.3 215.92 1618.45 si:ch1073-429i10.3, transcript variant X2
64. btf3 ENSDARG00000035400, ENSDARG00000116462 208.48 1562.68 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
65. col11a1a ENSDARG00000026165, ENSDARG00000115341 208.48 1562.68 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
66. rps23 ENSDARG00000021838 201.03 1506.84 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
67. FP067396.1 FP067396.1 193.58 1451.00
68. capns1b ENSDARG00000013804 193.58 1451.00 calpain, small subunit 1 b [Source:ZFIN;Acc:ZDB-GENE-030131-5206]
69. mt-cyb ENSDARG00000063924 193.58 1451.00 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
70. rps24 ENSDARG00000039347 186.14 1395.23 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
71. hdlbp hdlbp 178.69 1339.39
72. rps2 ENSDARG00000077291 178.69 1339.39 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
73. rps4x ENSDARG00000014690 178.69 1339.39 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
74. ssr2 ENSDARG00000005230 178.69 1339.39 signal sequence receptor, beta [Source:ZFIN;Acc:ZDB-GENE-010413-1]
75. hmgn2 ENSDARG00000099572 171.25 1283.62 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
76. rpl26 ENSDARG00000102317 171.25 1283.62 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
77. rpl28 ENSDARG00000005791 171.25 1283.62 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
78. rps12 ENSDARG00000036875, ENSDARG00000115157 171.25 1283.62 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
79. rps19 ENSDARG00000030602 171.25 1283.62 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
80. s100a10b ENSDARG00000025254 171.25 1283.62 S100 calcium binding protein A10b [Source:ZFIN;Acc:ZDB-GENE-040426-1937]
81. sparc ENSDARG00000019353 171.25 1283.62 secreted protein, acidic, cysteine-rich (osteonectin) [Source:ZFIN;Acc:ZDB-GENE-030131-9]
82. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 163.80 1227.78 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
83. rplp2 ENSDARG00000101406 163.80 1227.78 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
84. rpsa ENSDARG00000019181 163.80 1227.78 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
85. si:ch211-166a6.5 ENSDARG00000079745 163.80 1227.78 si:ch211-166a6.5 [Source:ZFIN;Acc:ZDB-GENE-030131-9913]
86. calr ENSDARG00000076290 156.36 1172.01 calreticulin [Source:ZFIN;Acc:ZDB-GENE-030131-4042]
87. rpl27 ENSDARG00000015128 156.36 1172.01 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
88. rplp0 ENSDARG00000051783 156.36 1172.01 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
89. rps9 ENSDARG00000011405, ENSDARG00000113248 156.36 1172.01 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
90. si:dkeyp-86f7.3 si:dkeyp-86f7.3 156.36 1172.01
91. AC024175.17 AC024175.17 148.91 1116.17
92. rplp2l ENSDARG00000011201 148.91 1116.17 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
93. rps10 ENSDARG00000034897 148.91 1116.17 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
94. si:ch1073-286c18.5 ENSDARG00000098567 148.91 1116.17 si:ch1073-286c18.5 [Source:ZFIN;Acc:ZDB-GENE-121214-240]
95. fam46ba 141.47 1060.40 family with sequence similarity 46, member Ba
96. mt-nd1 ENSDARG00000063895 141.47 1060.40 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
97. ppiab ENSDARG00000103994 141.47 1060.40 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
98. rpl15 ENSDARG00000009285 141.47 1060.40 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
99. rpl23a ENSDARG00000006316 141.47 1060.40 ribosomal protein L23a [Source:ZFIN;Acc:ZDB-GENE-030131-7479]
100. uba52 ENSDARG00000041435 141.47 1060.40 ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:ZFIN;Acc:ZDB-GENE-051023-7]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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