Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s17.

Sample reads: 133,401. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 17693.18 132631.65
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2791.31 20924.22 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. hbae3 ENSDARG00000079305 1819.15 13636.72 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
4. hbbe3 ENSDARG00000038147, ENSDARG00000109344 1546.84 11595.42 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
5. tpma ENSDARG00000033683 1124.16 8426.93 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
6. hbbe1.1 ENSDARG00000113599 1072.95 8043.05 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
7. pvalb2 ENSDARG00000002768, ENSDARG00000114085 973.79 7299.73 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
8. apoc1l apoc1l 968.91 7263.14
9. tmsb4x ENSDARG00000077777 940.46 7049.88 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
10. actb2 ENSDARG00000037870 923.39 6921.92 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
11. apoa1b ENSDARG00000101324 912.82 6842.68 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
12. ckma ENSDARG00000035327, ENSDARG00000114671 846.17 6343.06 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
13. mt-co2 ENSDARG00000063908 737.25 5526.57 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
14. apobb apobb 681.98 5112.26
15. eef1a1l1 ENSDARG00000020850 681.98 5112.26 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
16. mylz3 ENSDARG00000017441 681.16 5106.11 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
17. mt-nd2 ENSDARG00000063899 671.41 5033.02 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
18. apoa2 ENSDARG00000015866 669.78 5020.81 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
19. hmga1a ENSDARG00000028335 599.88 4496.82 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
20. ckmb ENSDARG00000040565 598.25 4484.60 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
21. mt-co3 ENSDARG00000063912 572.24 4289.63 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
22. mt-atp6 ENSDARG00000063911 567.37 4253.12 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
23. hbbe1.1_1 ENSDARG00000113599 554.36 4155.59 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
24. apoa1a ENSDARG00000012076, ENSDARG00000110395 519.41 3893.60 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
25. atp2a1 ENSDARG00000020574 516.16 3869.24 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
26. actb1 ENSDARG00000037746, ENSDARG00000113649 504.78 3783.93 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
27. actc1b ENSDARG00000099197 503.96 3777.79 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
28. hspa8 ENSDARG00000068992, ENSDARG00000114726 499.90 3747.35 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
29. ptmab ENSDARG00000101766 496.65 3722.99 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
30. eef2b ENSDARG00000100371, ENSDARG00000109247 466.57 3497.50 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
31. ppiaa ENSDARG00000009212 421.05 3156.28 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
32. mt-nd4 ENSDARG00000063917 408.05 3058.83 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
33. zgc:112425 zgc:112425 405.61 3040.53
34. tnnc2 ENSDARG00000070835, ENSDARG00000111155 396.67 2973.52 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
35. hbae1_1 393.42 2949.16 hemoglobin, alpha embryonic 1
36. si:dkey-151g10.6 si:dkey-151g10.6 390.98 2930.87
37. pvalb1 ENSDARG00000037789 390.17 2924.79 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
38. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 367.41 2754.18 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
39. pabpc1a ENSDARG00000017219 367.41 2754.18 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
40. zgc:161979_1 zgc:161979_1 357.65 2681.02
41. acta1b ENSDARG00000055618 355.21 2662.73 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
42. AL954137.2 ENSDARG00000114408 314.57 2358.08
43. mt-cyb ENSDARG00000063924 299.94 2248.41 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
44. id1 ENSDARG00000040764 298.31 2236.19 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
45. mt-nd1 ENSDARG00000063895 298.31 2236.19 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
46. hmgn2 ENSDARG00000099572 291.81 2187.47 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
47. apoeb ENSDARG00000040295 288.56 2163.10 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
48. rpl8 ENSDARG00000014867 285.31 2138.74 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
49. bhmt ENSDARG00000013430 282.06 2114.38 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
50. btf3 ENSDARG00000035400, ENSDARG00000116462 274.74 2059.51 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
51. rps2 ENSDARG00000077291 270.68 2029.07 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
52. rpl9 ENSDARG00000037350, ENSDARG00000112384 263.36 1974.20 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
53. ctsla ENSDARG00000007836 260.92 1955.91 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
54. rpl10a ENSDARG00000042905, ENSDARG00000115649 256.05 1919.40 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
55. rpl23 ENSDARG00000053457 249.54 1870.60 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
56. rplp1 ENSDARG00000021864 247.10 1852.31 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
57. zgc:161979 zgc:161979 241.41 1809.66
58. rpl21 ENSDARG00000010516, ENSDARG00000110263 239.79 1797.51 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
59. fth1a ENSDARG00000015551 235.72 1767.00 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
60. rpl18a ENSDARG00000025073 233.29 1748.79 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
61. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 232.47 1742.64 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
62. hbae1 229.22 1718.28 hemoglobin, alpha embryonic 1
63. tnnt3a ENSDARG00000030270 225.97 1693.92 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
64. hsp90ab1 ENSDARG00000029150 223.53 1675.63 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
65. rpl26 ENSDARG00000102317 222.72 1669.55 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
66. rpl36a ENSDARG00000058105, ENSDARG00000112656 219.47 1645.19 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
67. zgc:92533 zgc:92533 217.84 1632.97
68. apoa4 apoa4 208.09 1559.88
69. rpl11 ENSDARG00000043509 202.40 1517.23 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
70. rpsa ENSDARG00000019181 201.59 1511.16 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
71. si:dkeyp-86f7.3 si:dkeyp-86f7.3 199.15 1492.87
72. eif5a ENSDARG00000017235 197.52 1480.65 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
73. rps27a ENSDARG00000032725, ENSDARG00000114059 197.52 1480.65 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
74. rpl19 ENSDARG00000013307 195.90 1468.51 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
75. rps23 ENSDARG00000021838 193.46 1450.22 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
76. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 187.77 1407.56 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
77. h3f3a 185.33 1389.27 H3 histone, family 3A, transcript variant X1
78. ttna ttna 185.33 1389.27
79. hnrnpab hnrnpab 184.52 1383.20
80. cirbp cirbp 182.08 1364.91
81. rps12 ENSDARG00000036875, ENSDARG00000115157 182.08 1364.91 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
82. rps14 ENSDARG00000036629 179.64 1346.62 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
83. cfl1 ENSDARG00000021124 178.83 1340.55 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
84. si:ch1073-429i10.3 177.20 1328.33 si:ch1073-429i10.3, transcript variant X2
85. zgc:153129 zgc:153129 175.57 1316.11
86. mt-co1 ENSDARG00000063905 173.95 1303.96 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
87. rps6 ENSDARG00000019778 173.95 1303.96 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
88. ptmaa ENSDARG00000021113, ENSDARG00000110479 173.14 1297.89 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
89. tnnt3b ENSDARG00000068457 170.70 1279.60 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
90. rps26l ENSDARG00000030408 167.45 1255.24 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
91. rpl5b ENSDARG00000015862, ENSDARG00000109661 166.63 1249.09 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
92. rpl15 ENSDARG00000009285 162.57 1218.66 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
93. acta1a ENSDARG00000036371 161.76 1212.59 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
94. myhz1.2 ENSDARG00000067995 160.94 1206.44 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
95. fkbp1aa ENSDARG00000022684 160.13 1200.37 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
96. rpl27 ENSDARG00000015128 160.13 1200.37 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
97. tnni2a.4 ENSDARG00000029069 160.13 1200.37 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
98. rps4x ENSDARG00000014690 158.50 1188.15 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
99. sepp1a 158.50 1188.15 selenoprotein P, plasma, 1a
100. zgc:123194 zgc:123194 157.69 1182.08
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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