Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s15.

Sample reads: 133,399. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 17071.09 127970.06
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3241.35 24298.14 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. he1a 1903.73 14270.94 hatching enzyme 1a, transcript variant X1
4. zgc:174855 ENSDARG00000094559 1637.64 12276.25 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
5. tmsb4x ENSDARG00000077777 1186.71 8895.94 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
6. si:dkey-269i1.3 932.22 6988.20 si:dkey-269i1.3
7. actb2 ENSDARG00000037870 917.93 6881.08 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
8. CABZ01044814.2 CABZ01044814.2 909.01 6814.21
9. hbae3 ENSDARG00000079305 884.90 6633.48 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
10. ctslb ENSDARG00000039173, ENSDARG00000074306 836.68 6272.01 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
11. tpma ENSDARG00000033683 742.92 5569.15 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
12. zgc:112425 zgc:112425 701.85 5261.28
13. eef1a1l1 ENSDARG00000020850 667.02 5000.18 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
14. mt-co2 ENSDARG00000063908 660.77 4953.33 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
15. ptmab ENSDARG00000101766 646.48 4846.21 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
16. pvalb2 ENSDARG00000002768, ENSDARG00000114085 646.48 4846.21 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
17. apoa1b ENSDARG00000101324 632.20 4739.16 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
18. hmga1a ENSDARG00000028335 613.44 4598.53 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
19. apoc1l apoc1l 594.69 4457.98
20. ppiaa ENSDARG00000009212 540.22 4049.65 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
21. mt-co3 ENSDARG00000063912 537.55 4029.64 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
22. apoa2 ENSDARG00000015866 533.97 4002.80 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
23. wu:fa26c03 529.51 3969.37 wu:fa26c03
24. hbbe3 ENSDARG00000038147, ENSDARG00000109344 528.62 3962.70 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
25. mt-nd4 ENSDARG00000063917 527.72 3955.95 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
26. mt-nd2 ENSDARG00000063899 526.83 3949.28 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
27. hbbe1.1 ENSDARG00000113599 510.76 3828.81 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
28. si:dkey-239j18.3 ENSDARG00000089806 505.40 3788.63 si:dkey-239j18.3 [Source:ZFIN;Acc:ZDB-GENE-121214-39]
29. mt-atp6 ENSDARG00000063911 475.93 3567.72 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
30. ckmb ENSDARG00000040565 458.07 3433.83 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
31. ckma ENSDARG00000035327, ENSDARG00000114671 451.82 3386.98 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
32. apobb apobb 450.93 3380.31
33. mylz3 ENSDARG00000017441 437.54 3279.93 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
34. hspa8 ENSDARG00000068992, ENSDARG00000114726 419.68 3146.05 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
35. atp2a1 ENSDARG00000020574 418.79 3139.38 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
36. apoa1a ENSDARG00000012076, ENSDARG00000110395 416.11 3119.29 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
37. si:dkey-151g10.6 si:dkey-151g10.6 384.85 2884.95
38. actb1 ENSDARG00000037746, ENSDARG00000113649 368.78 2764.49 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
39. eef2b ENSDARG00000100371, ENSDARG00000109247 363.42 2724.31 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
40. he1b 353.60 2650.69 hatching enzyme 1b
41. pabpc1a ENSDARG00000017219 333.06 2496.72 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
42. id1 ENSDARG00000040764 331.28 2483.38 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
43. AL954137.2 ENSDARG00000114408 328.60 2463.29
44. icn ENSDARG00000009978 324.13 2429.78 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
45. actc1b ENSDARG00000099197 316.10 2369.58 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
46. bhmt ENSDARG00000013430 280.38 2101.81 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
47. hbbe1.1_1 ENSDARG00000113599 277.70 2081.72 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
48. zgc:161979_1 zgc:161979_1 274.13 2054.96
49. si:dkey-26g8.5 ENSDARG00000089750 268.77 2014.78 si:dkey-26g8.5 [Source:ZFIN;Acc:ZDB-GENE-121214-19]
50. rpl26 ENSDARG00000102317 260.74 1954.59 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
51. mt-cyb ENSDARG00000063924 258.95 1941.17 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
52. tnnc2 ENSDARG00000070835, ENSDARG00000111155 258.95 1941.17 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
53. rpl10a ENSDARG00000042905, ENSDARG00000115649 252.70 1894.32 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
54. rpl8 ENSDARG00000014867 250.91 1880.90 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
55. mt-nd1 ENSDARG00000063895 248.24 1860.88 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
56. rpl21 ENSDARG00000010516, ENSDARG00000110263 238.41 1787.19 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
57. btf3 ENSDARG00000035400, ENSDARG00000116462 235.73 1767.10 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
58. pvalb1 ENSDARG00000037789 235.73 1767.10 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
59. rplp1 ENSDARG00000021864 232.16 1740.34 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
60. rps23 ENSDARG00000021838 232.16 1740.34 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
61. hnrnpab hnrnpab 229.48 1720.25
62. rpl18a ENSDARG00000025073 228.59 1713.58 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
63. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 227.70 1706.91 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
64. si:dkeyp-86f7.3 si:dkeyp-86f7.3 226.80 1700.16
65. rpl11 ENSDARG00000043509 222.34 1666.73 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
66. zgc:161979 zgc:161979 214.30 1606.46
67. rps26l ENSDARG00000030408 210.73 1579.70 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
68. rpl9 ENSDARG00000037350, ENSDARG00000112384 209.84 1573.02 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
69. rpl23 ENSDARG00000053457 208.05 1559.61 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
70. rps27a ENSDARG00000032725, ENSDARG00000114059 205.37 1539.52 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
71. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 204.48 1532.84 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
72. hmgn2 ENSDARG00000099572 202.70 1519.50 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
73. rpl36a ENSDARG00000058105, ENSDARG00000112656 195.55 1465.90 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
74. si:ch1073-429i10.3 195.55 1465.90 si:ch1073-429i10.3, transcript variant X2
75. rpsa ENSDARG00000019181 192.87 1445.81 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
76. cirbp cirbp 191.09 1432.47
77. hsp90ab1 ENSDARG00000029150 188.41 1412.38 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
78. h3f3a 187.52 1405.71 H3 histone, family 3A, transcript variant X1
79. apoeb ENSDARG00000040295 186.62 1398.96 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
80. rps14 ENSDARG00000036629 179.48 1345.44 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
81. cfl1 ENSDARG00000021124 175.91 1318.67 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
82. fkbp1aa ENSDARG00000022684 175.01 1311.93 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
83. acta1b ENSDARG00000055618 172.34 1291.91 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
84. hbae1_1 170.55 1278.49 hemoglobin, alpha embryonic 1
85. ctsla ENSDARG00000007836 167.87 1258.40 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
86. eif5a ENSDARG00000017235 166.98 1251.73 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
87. rps2 ENSDARG00000077291 165.19 1238.31 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
88. krt8 ENSDARG00000058358, ENSDARG00000109279 162.51 1218.22 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
89. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 161.62 1211.55 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
90. rplp0 ENSDARG00000051783 160.73 1204.88 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
91. rps27.1 ENSDARG00000023298 158.94 1191.46 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
92. rps19 ENSDARG00000030602 158.05 1184.79 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
93. apoa4 apoa4 157.16 1178.12
94. fth1a ENSDARG00000015551 157.16 1178.12 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
95. zgc:153129 zgc:153129 155.37 1164.70
96. fabp3 ENSDARG00000023290 153.58 1151.28 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
97. hnrnpa0a ENSDARG00000089302 153.58 1151.28 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
98. rpl19 ENSDARG00000013307 153.58 1151.28 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
99. rps12 ENSDARG00000036875, ENSDARG00000115157 153.58 1151.28 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
100. zgc:92533 zgc:92533 153.58 1151.28
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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