Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s14.

Sample reads: 133,398. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 12876.83 96529.70
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3126.87 23440.23 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. he1a 2665.45 19981.25 hatching enzyme 1a, transcript variant X1
4. zgc:174855 ENSDARG00000094559 2262.46 16960.28 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
5. CABZ01044814.2 CABZ01044814.2 1181.95 8860.35
6. si:dkey-269i1.3 1175.88 8814.85 si:dkey-269i1.3
7. ctslb ENSDARG00000039173, ENSDARG00000074306 1152.18 8637.19 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
8. tmsb4x ENSDARG00000077777 1107.52 8302.40 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
9. actb2 ENSDARG00000037870 991.20 7430.42 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
10. zgc:112425 zgc:112425 855.59 6413.83
11. ptmab ENSDARG00000101766 782.27 5864.20 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
12. hmga1a ENSDARG00000028335 775.10 5810.45 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
13. eef1a1l1 ENSDARG00000020850 771.24 5781.51 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
14. wu:fa26c03 723.83 5426.11 wu:fa26c03
15. mt-co2 ENSDARG00000063908 718.32 5384.80 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
16. si:dkey-239j18.3 ENSDARG00000089806 705.64 5289.75 si:dkey-239j18.3 [Source:ZFIN;Acc:ZDB-GENE-121214-39]
17. ppiaa ENSDARG00000009212 657.68 4930.22 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
18. hspa8 ENSDARG00000068992, ENSDARG00000114726 584.36 4380.59 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
19. mt-nd4 ENSDARG00000063917 579.40 4343.41 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
20. mt-nd2 ENSDARG00000063899 534.74 4008.62 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
21. apoa1b ENSDARG00000101324 525.92 3942.50 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
22. si:dkey-151g10.6 si:dkey-151g10.6 513.79 3851.57
23. actb1 ENSDARG00000037746, ENSDARG00000113649 503.32 3773.08 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
24. mt-co3 ENSDARG00000063912 500.01 3748.27 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
25. hbae3 ENSDARG00000079305 447.09 3351.56 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
26. apoc1l apoc1l 440.47 3301.93
27. AL954137.2 ENSDARG00000114408 435.51 3264.75
28. apoa2 ENSDARG00000015866 426.14 3194.51 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
29. he1b 425.59 3190.39 hatching enzyme 1b
30. id1 ENSDARG00000040764 421.18 3157.33 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
31. eef2b ENSDARG00000100371, ENSDARG00000109247 418.42 3136.64 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
32. mt-atp6 ENSDARG00000063911 401.88 3012.65 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
33. pabpc1a ENSDARG00000017219 401.33 3008.53 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
34. apobb apobb 374.87 2810.17
35. rpl8 ENSDARG00000014867 364.40 2731.68 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
36. icn ENSDARG00000009978 356.13 2669.69 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
37. apoa1a ENSDARG00000012076, ENSDARG00000110395 337.38 2529.13 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
38. si:dkey-26g8.5 ENSDARG00000089750 331.32 2483.70 si:dkey-26g8.5 [Source:ZFIN;Acc:ZDB-GENE-121214-19]
39. rpl10a ENSDARG00000042905, ENSDARG00000115649 322.50 2417.58 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
40. hmgn2 ENSDARG00000099572 307.06 2301.84 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
41. rplp1 ENSDARG00000021864 305.41 2289.47 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
42. rpl26 ENSDARG00000102317 299.90 2248.17 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
43. hsp90ab1 ENSDARG00000029150 296.04 2219.23 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
44. mt-nd1 ENSDARG00000063895 287.22 2153.11 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
45. si:dkeyp-86f7.3 si:dkeyp-86f7.3 283.91 2128.30
46. rps26l ENSDARG00000030408 281.70 2111.73 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
47. mt-cyb ENSDARG00000063924 279.50 2095.24 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
48. rpl18a ENSDARG00000025073 275.64 2066.30 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
49. rpl21 ENSDARG00000010516, ENSDARG00000110263 269.58 2020.88 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
50. cirbp cirbp 267.92 2008.43
51. zgc:161979_1 zgc:161979_1 265.17 1987.82
52. rps23 ENSDARG00000021838 264.62 1983.69 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
53. rpl36a ENSDARG00000058105, ENSDARG00000112656 262.96 1971.25 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
54. btf3 ENSDARG00000035400, ENSDARG00000116462 262.41 1967.13 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
55. hbbe1.1 ENSDARG00000113599 255.79 1917.50 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
56. hnrnpab hnrnpab 254.14 1905.13
57. rpl23 ENSDARG00000053457 252.49 1892.76 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
58. rpl11 ENSDARG00000043509 251.94 1888.64 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
59. rps27a ENSDARG00000032725, ENSDARG00000114059 244.22 1830.77 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
60. hbbe3 ENSDARG00000038147, ENSDARG00000109344 240.36 1801.83 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
61. rps14 ENSDARG00000036629 239.26 1793.59 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
62. rpsa ENSDARG00000019181 237.60 1781.14 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
63. rpl9 ENSDARG00000037350, ENSDARG00000112384 229.88 1723.27 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
64. zgc:174153 ENSDARG00000079376 226.03 1694.41 zgc:174153 [Source:ZFIN;Acc:ZDB-GENE-080215-7]
65. h3f3a 222.72 1669.60 H3 histone, family 3A, transcript variant X1
66. rpl19 ENSDARG00000013307 217.20 1628.22 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
67. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 216.10 1619.97 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
68. si:ch1073-429i10.3 216.10 1619.97 si:ch1073-429i10.3, transcript variant X2
69. cfl1 ENSDARG00000021124 215.00 1611.72 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
70. krt8 ENSDARG00000058358, ENSDARG00000109279 215.00 1611.72 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
71. rps19 ENSDARG00000030602 204.53 1533.24 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
72. zgc:92533 zgc:92533 202.87 1520.79
73. tpma ENSDARG00000033683 200.67 1504.30 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
74. rplp0 ENSDARG00000051783 199.56 1495.98 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
75. fkbp1aa ENSDARG00000022684 197.36 1479.49 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
76. si:dkey-269i1.2 si:dkey-269i1.2 196.26 1471.24
77. eif5a ENSDARG00000017235 193.50 1450.55 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
78. mt-co1 ENSDARG00000063905 193.50 1450.55 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
79. rps27.1 ENSDARG00000023298 193.50 1450.55 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
80. rps12 ENSDARG00000036875, ENSDARG00000115157 189.09 1417.49 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
81. rps2 ENSDARG00000077291 185.78 1392.68 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
82. fabp3 ENSDARG00000023290 185.23 1388.56 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
83. ptmaa ENSDARG00000021113, ENSDARG00000110479 184.68 1384.43 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
84. khdrbs1a ENSDARG00000052856 184.13 1380.31 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
85. rps20 ENSDARG00000036044 183.58 1376.19 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
86. rpl15 ENSDARG00000009285 178.62 1339.00 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
87. rps9 ENSDARG00000011405, ENSDARG00000113248 178.62 1339.00 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
88. rpl27 ENSDARG00000015128 178.06 1334.81 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
89. rpl5b ENSDARG00000015862, ENSDARG00000109661 174.76 1310.07 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
90. zgc:161979 zgc:161979 174.76 1310.07
91. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 172.00 1289.38 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
92. rpl36 ENSDARG00000100588 170.90 1281.13 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
93. bhmt ENSDARG00000013430 167.59 1256.32 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
94. zgc:123194 zgc:123194 167.59 1256.32
95. hnrnpa0a ENSDARG00000089302 165.94 1243.95 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
96. rplp2 ENSDARG00000101406 165.38 1239.75 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
97. rps6 ENSDARG00000019778 164.83 1235.63 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
98. marcksl1b ENSDARG00000035715 163.18 1223.26 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
99. col1a1a ENSDARG00000012405, ENSDARG00000116113 162.63 1219.14 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
100. rps4x ENSDARG00000014690 162.08 1215.01 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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