Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s13.

Sample reads: 133,394. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 13447.29 100809.09
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2582.19 19357.67 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 1438.52 10784.02 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. zgc:112425 zgc:112425 1117.81 8379.79
5. he1a 1068.30 8008.63 hatching enzyme 1a, transcript variant X1
6. actb2 ENSDARG00000037870 1009.44 7567.38 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
7. hmga1a ENSDARG00000028335 975.33 7311.67 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
8. zgc:174855 ENSDARG00000094559 915.92 6866.30 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
9. ptmab ENSDARG00000101766 884.57 6631.28 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
10. eef1a1l1 ENSDARG00000020850 780.60 5851.85 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
11. mt-co2 ENSDARG00000063908 780.05 5847.73 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
12. mt-nd2 ENSDARG00000063899 741.54 5559.04 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. mt-nd4 ENSDARG00000063917 662.33 4965.23 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
14. mt-co3 ENSDARG00000063912 639.77 4796.11 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
15. ppiaa ENSDARG00000009212 625.47 4688.90 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
16. si:dkey-151g10.6 si:dkey-151g10.6 606.76 4548.64
17. hspa8 ENSDARG00000068992, ENSDARG00000114726 576.51 4321.87 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
18. AL954137.2 ENSDARG00000114408 562.76 4218.79
19. ctslb ENSDARG00000039173, ENSDARG00000074306 535.25 4012.56 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
20. mt-atp6 ENSDARG00000063911 519.30 3892.99 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
21. hbae3 ENSDARG00000079305 494.54 3707.37 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
22. CABZ01044814.2 CABZ01044814.2 480.24 3600.17
23. eef2b ENSDARG00000100371, ENSDARG00000109247 479.69 3596.05 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
24. si:dkey-269i1.3 478.04 3583.68 si:dkey-269i1.3
25. id1 ENSDARG00000040764 445.58 3340.34 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
26. actb1 ENSDARG00000037746, ENSDARG00000113649 410.38 3076.46 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
27. wu:fa26c03 399.93 2998.12 wu:fa26c03
28. pabpc1a ENSDARG00000017219 392.77 2944.44 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
29. hmgn2 ENSDARG00000099572 349.32 2618.72 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
30. rpl18a ENSDARG00000025073 333.36 2499.07 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
31. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 325.11 2437.22 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
32. hnrnpab hnrnpab 317.41 2379.50
33. hbbe3 ENSDARG00000038147, ENSDARG00000109344 308.06 2309.41 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
34. rpl26 ENSDARG00000102317 306.96 2301.16 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
35. rpl8 ENSDARG00000014867 305.86 2292.91 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
36. rpl10a ENSDARG00000042905, ENSDARG00000115649 302.56 2268.17 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
37. si:dkey-239j18.3 ENSDARG00000089806 301.46 2259.93 si:dkey-239j18.3 [Source:ZFIN;Acc:ZDB-GENE-121214-39]
38. btf3 ENSDARG00000035400, ENSDARG00000116462 297.61 2231.07 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
39. hbbe1.1 ENSDARG00000113599 292.11 2189.83 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
40. mt-nd1 ENSDARG00000063895 289.35 2169.14 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
41. rps23 ENSDARG00000021838 287.70 2156.77 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
42. rpl21 ENSDARG00000010516, ENSDARG00000110263 277.80 2082.56 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
43. cirbp cirbp 276.15 2070.19
44. hsp90ab1 ENSDARG00000029150 273.95 2053.70 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
45. rplp1 ENSDARG00000021864 271.75 2037.20 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
46. mt-cyb ENSDARG00000063924 267.90 2008.34 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
47. hnrnpa0a ENSDARG00000089302 267.35 2004.22 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
48. rpl23 ENSDARG00000053457 264.60 1983.60 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
49. si:ch1073-429i10.3 264.05 1979.48 si:ch1073-429i10.3, transcript variant X2
50. h3f3a 263.50 1975.36 H3 histone, family 3A, transcript variant X1
51. icn ENSDARG00000009978 247.00 1851.66 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
52. rpl9 ENSDARG00000037350, ENSDARG00000112384 244.80 1835.17 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
53. rpl11 ENSDARG00000043509 242.60 1818.68 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
54. cfl1 ENSDARG00000021124 235.99 1769.13 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
55. zgc:123194 zgc:123194 234.34 1756.76
56. rps27a ENSDARG00000032725, ENSDARG00000114059 232.69 1744.39 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
57. ptmaa ENSDARG00000021113, ENSDARG00000110479 228.84 1715.52 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
58. si:dkeyp-86f7.3 si:dkeyp-86f7.3 227.74 1707.28
59. pcna ENSDARG00000054155 226.64 1699.03 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
60. rps14 ENSDARG00000036629 223.89 1678.42 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
61. fkbp1aa ENSDARG00000022684 222.24 1666.05 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
62. rpsa ENSDARG00000019181 221.14 1657.80 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
63. khdrbs1a ENSDARG00000052856 220.59 1653.68 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
64. he1b 215.09 1612.45 hatching enzyme 1b
65. rps26l ENSDARG00000030408 213.44 1600.08 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
66. rpl36a ENSDARG00000058105, ENSDARG00000112656 212.89 1595.95 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
67. rplp0 ENSDARG00000051783 205.19 1538.23 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
68. marcksb ENSDARG00000008803 196.94 1476.38 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
69. eif5a ENSDARG00000017235 196.39 1472.26 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
70. mt-co1 ENSDARG00000063905 195.29 1464.01 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
71. rps20 ENSDARG00000036044 194.74 1459.89 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
72. rps27.1 ENSDARG00000023298 192.54 1443.40 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
73. AC024175.17 AC024175.17 189.24 1418.66
74. rpl19 ENSDARG00000013307 188.14 1410.41 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
75. rps2 ENSDARG00000077291 187.59 1406.29 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
76. rps12 ENSDARG00000036875, ENSDARG00000115157 185.94 1393.92 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
77. pbx4 ENSDARG00000052150 185.38 1389.72 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
78. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 179.33 1344.37 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
79. marcksl1b ENSDARG00000035715 179.33 1344.37 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
80. col1a1a ENSDARG00000012405, ENSDARG00000116113 177.13 1327.87 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
81. apoa1b ENSDARG00000101324 174.93 1311.38 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
82. rpl5b ENSDARG00000015862, ENSDARG00000109661 173.28 1299.01 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
83. rpl36 ENSDARG00000100588 172.73 1294.89 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
84. rps19 ENSDARG00000030602 172.73 1294.89 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
85. apoc1l apoc1l 170.53 1278.40
86. h3f3d ENSDARG00000045248 170.53 1278.40 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
87. rps15 ENSDARG00000070849, ENSDARG00000110979 167.78 1257.78 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
88. ran ENSDARG00000057026 165.03 1237.17 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
89. rps9 ENSDARG00000011405, ENSDARG00000113248 162.83 1220.67 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
90. rplp2l ENSDARG00000011201 161.18 1208.30 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
91. top1l ENSDARG00000070545 160.63 1204.18 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
92. krt8 ENSDARG00000058358, ENSDARG00000109279 159.53 1195.93 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
93. ubc ENSDARG00000102632 158.43 1187.69 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
94. rpl27 ENSDARG00000015128 156.23 1171.20 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
95. rpl15 ENSDARG00000009285 155.68 1167.07 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
96. marcksl1a ENSDARG00000039034 155.13 1162.95 MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
97. rps4x ENSDARG00000014690 154.58 1158.83 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
98. pnrc2 ENSDARG00000053291, ENSDARG00000112537 154.03 1154.70 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
99. rplp2 ENSDARG00000101406 153.48 1150.58 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
100. nucks1a ENSDARG00000078473 152.93 1146.46 nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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