Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s12.

Sample reads: 133,401. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 14740.24 110495.96
2. krt4 ENSDARG00000017624, ENSDARG00000115790 1945.00 14580.13 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 1351.54 10131.43 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. zgc:112425 zgc:112425 1072.18 8037.29
5. actb2 ENSDARG00000037870 1010.45 7574.55 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
6. ptmab ENSDARG00000101766 885.17 6635.42 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
7. he1a 800.13 5997.94 hatching enzyme 1a, transcript variant X1
8. eef1a1l1 ENSDARG00000020850 778.64 5836.85 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
9. hmga1a ENSDARG00000028335 730.63 5476.96 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
10. mt-nd4 ENSDARG00000063917 713.72 5350.20 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
11. mt-co2 ENSDARG00000063908 702.29 5264.51 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
12. zgc:174855 ENSDARG00000094559 698.63 5237.08 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
13. ppiaa ENSDARG00000009212 693.60 5199.37 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
14. mt-nd2 ENSDARG00000063899 623.64 4674.94 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
15. AL954137.2 ENSDARG00000114408 602.61 4517.29
16. hspa8 ENSDARG00000068992, ENSDARG00000114726 587.07 4400.80 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
17. hbae3 ENSDARG00000079305 586.61 4397.35 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
18. mt-co3 ENSDARG00000063912 571.52 4284.23 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. si:dkey-151g10.6 si:dkey-151g10.6 529.00 3965.50
20. id1 ENSDARG00000040764 507.97 3807.85 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
21. actb1 ENSDARG00000037746, ENSDARG00000113649 469.11 3516.55 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
22. eef2b ENSDARG00000100371, ENSDARG00000109247 464.08 3478.84 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
23. mt-atp6 ENSDARG00000063911 434.81 3259.43 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
24. hbbe3 ENSDARG00000038147, ENSDARG00000109344 406.01 3043.54 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
25. pabpc1a ENSDARG00000017219 406.01 3043.54 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
26. CABZ01044814.2 CABZ01044814.2 371.72 2786.49
27. hmgn2 ENSDARG00000099572 353.43 2649.39 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
28. si:dkey-269i1.3 352.97 2645.94 si:dkey-269i1.3
29. hbbe1.1 ENSDARG00000113599 345.66 2591.14 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
30. hsp90ab1 ENSDARG00000029150 341.54 2560.26 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
31. rpl10a ENSDARG00000042905, ENSDARG00000115649 332.40 2491.74 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
32. ctslb ENSDARG00000039173, ENSDARG00000074306 330.11 2474.57 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
33. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 329.20 2467.75 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
34. hnrnpab hnrnpab 326.45 2447.14
35. rpl8 ENSDARG00000014867 326.00 2443.76 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
36. AC024175.17 AC024175.17 322.34 2416.33
37. rpl21 ENSDARG00000010516, ENSDARG00000110263 320.51 2402.61 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
38. rpl23 ENSDARG00000053457 315.48 2364.90 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
39. mt-cyb ENSDARG00000063924 313.65 2351.19 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
40. rpl9 ENSDARG00000037350, ENSDARG00000112384 308.16 2310.03 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
41. h3f3a 306.34 2296.39 H3 histone, family 3A, transcript variant X1
42. mt-nd1 ENSDARG00000063895 306.34 2296.39 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
43. rpl26 ENSDARG00000102317 297.65 2231.25 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
44. si:dkeyp-86f7.3 si:dkeyp-86f7.3 296.73 2224.35
45. rplp1 ENSDARG00000021864 280.27 2100.96 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
46. rps23 ENSDARG00000021838 274.33 2056.44 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
47. cirbp cirbp 271.59 2035.90
48. zgc:123194 zgc:123194 269.30 2018.73
49. btf3 ENSDARG00000035400, ENSDARG00000116462 268.39 2011.91 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
50. cfl1 ENSDARG00000021124 258.79 1939.94 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
51. si:ch1073-429i10.3 249.64 1871.35 si:ch1073-429i10.3, transcript variant X2
52. rpl18a ENSDARG00000025073 242.78 1819.93 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
53. eif5a ENSDARG00000017235 241.87 1813.11 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
54. rpl36a ENSDARG00000058105, ENSDARG00000112656 232.72 1744.52 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
55. rpsa ENSDARG00000019181 230.89 1730.80 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
56. ptmaa ENSDARG00000021113, ENSDARG00000110479 229.52 1720.53 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
57. hnrnpa0a ENSDARG00000089302 228.15 1710.26 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
58. rpl11 ENSDARG00000043509 223.12 1672.55 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
59. rps26l ENSDARG00000030408 222.66 1669.11 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
60. rps27a ENSDARG00000032725, ENSDARG00000114059 216.72 1624.58 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
61. rpl19 ENSDARG00000013307 214.44 1607.49 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
62. fkbp1aa ENSDARG00000022684 208.49 1562.89 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
63. khdrbs1a ENSDARG00000052856 203.92 1528.63 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
64. rps12 ENSDARG00000036875, ENSDARG00000115157 203.92 1528.63 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
65. si:dkey-239j18.3 ENSDARG00000089806 203.92 1528.63 si:dkey-239j18.3 [Source:ZFIN;Acc:ZDB-GENE-121214-39]
66. wu:fa26c03 201.18 1508.09 wu:fa26c03
67. rps14 ENSDARG00000036629 199.80 1497.74 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
68. rps2 ENSDARG00000077291 197.52 1480.65 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
69. marcksb ENSDARG00000008803 197.06 1477.20 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
70. rplp0 ENSDARG00000051783 193.86 1453.22 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
71. pcna ENSDARG00000054155 191.57 1436.05 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
72. mt-co1 ENSDARG00000063905 187.00 1401.79 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
73. hbbe1.1_1 ENSDARG00000113599 186.54 1398.34 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
74. tuba8l ENSDARG00000042708 186.54 1398.34 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
75. rpl5b ENSDARG00000015862, ENSDARG00000109661 186.09 1394.97 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
76. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 184.72 1384.70 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
77. rps20 ENSDARG00000036044 183.80 1377.80 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
78. ran ENSDARG00000057026 181.97 1364.09 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
79. rps19 ENSDARG00000030602 180.60 1353.82 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
80. h3f3d ENSDARG00000045248 178.31 1336.65 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
81. rpl27 ENSDARG00000015128 177.86 1333.28 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
82. top1l ENSDARG00000070545 176.94 1326.38 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
83. fabp3 ENSDARG00000023290 176.49 1323.01 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
84. rpl36 ENSDARG00000100588 174.66 1309.29 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
85. rps4x ENSDARG00000014690 174.66 1309.29 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
86. rps27.1 ENSDARG00000023298 172.83 1295.57 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
87. krt8 ENSDARG00000058358, ENSDARG00000109279 172.37 1292.12 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
88. marcksl1b ENSDARG00000035715 171.46 1285.30 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
89. icn ENSDARG00000009978 166.88 1250.97 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
90. pbx4 ENSDARG00000052150 166.88 1250.97 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
91. rps6 ENSDARG00000019778 166.43 1247.59 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
92. rpl15 ENSDARG00000009285 165.97 1244.15 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
93. pnrc2 ENSDARG00000053291, ENSDARG00000112537 160.94 1206.44 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
94. faua ENSDARG00000099022 160.48 1202.99 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
95. anp32a ENSDARG00000006487 160.03 1199.62 acidic (leucine-rich) nuclear phosphoprotein 32 family, member A [Source:ZFIN;Acc:ZDB-GENE-030131-7850]
96. ddx5 ENSDARG00000038068 157.74 1182.45 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
97. rps15 ENSDARG00000070849, ENSDARG00000110979 157.28 1179.00 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
98. apoa1b ENSDARG00000101324 155.91 1168.73 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
99. fth1a ENSDARG00000015551 153.63 1151.64 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
100. rplp2l ENSDARG00000011201 152.71 1144.75 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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