Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s11.

Sample reads: 133,405. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 13187.96 98856.95
2. krt4 ENSDARG00000017624, ENSDARG00000115790 1757.32 13172.87 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. zgc:112425 zgc:112425 1255.01 9407.56
4. ptmab ENSDARG00000101766 1135.70 8513.21 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
5. tmsb4x ENSDARG00000077777 1122.07 8411.04 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
6. hmga1a ENSDARG00000028335 1105.87 8289.60 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
7. eef1a1l1 ENSDARG00000020850 941.63 7058.46 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
8. actb2 ENSDARG00000037870 897.81 6729.98 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
9. ppiaa ENSDARG00000009212 849.93 6371.08 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
10. mt-co2 ENSDARG00000063908 683.85 5126.14 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
11. AL954137.2 ENSDARG00000114408 680.90 5104.03
12. mt-nd4 ENSDARG00000063917 663.23 4971.57 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
13. mt-nd2 ENSDARG00000063899 601.36 4507.79 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
14. hspa8 ENSDARG00000068992, ENSDARG00000114726 581.48 4358.77 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
15. mt-co3 ENSDARG00000063912 580.00 4347.68 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
16. si:dkey-151g10.6 si:dkey-151g10.6 563.80 4226.24
17. hmgn2 ENSDARG00000099572 534.71 4008.19 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
18. id1 ENSDARG00000040764 523.29 3922.58 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
19. eef2b ENSDARG00000100371, ENSDARG00000109247 517.40 3878.43 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
20. actb1 ENSDARG00000037746, ENSDARG00000113649 512.98 3845.30 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
21. hnrnpab hnrnpab 436.75 3273.88
22. mt-atp6 ENSDARG00000063911 409.87 3072.39 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
23. h3f3a 391.46 2934.38 H3 histone, family 3A, transcript variant X1
24. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 385.93 2892.93 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
25. rpl23 ENSDARG00000053457 382.25 2865.35 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
26. pabpc1a ENSDARG00000017219 380.04 2848.78 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
27. rpl10a ENSDARG00000042905, ENSDARG00000115649 376.36 2821.19 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
28. rpl8 ENSDARG00000014867 367.52 2754.93 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
29. hsp90ab1 ENSDARG00000029150 364.20 2730.04 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
30. rpl9 ENSDARG00000037350, ENSDARG00000112384 339.53 2545.12 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
31. rpl21 ENSDARG00000010516, ENSDARG00000110263 331.06 2481.63 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
32. rplp1 ENSDARG00000021864 329.59 2470.61 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
33. cirbp cirbp 324.43 2431.93
34. btf3 ENSDARG00000035400, ENSDARG00000116462 322.96 2420.91 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
35. rpl26 ENSDARG00000102317 310.44 2327.06 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
36. rpl18a ENSDARG00000025073 308.23 2310.49 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
37. si:dkeyp-86f7.3 si:dkeyp-86f7.3 295.34 2213.87
38. cfl1 ENSDARG00000021124 294.24 2205.62 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
39. mt-cyb ENSDARG00000063924 285.40 2139.36 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
40. rpsa ENSDARG00000019181 285.03 2136.58 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
41. mt-nd1 ENSDARG00000063895 281.35 2109.00 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
42. fkbp1aa ENSDARG00000022684 279.14 2092.43 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
43. rpl11 ENSDARG00000043509 278.03 2084.11 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
44. rps23 ENSDARG00000021838 276.19 2070.32 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
45. zgc:123194 zgc:123194 272.88 2045.51
46. si:ch1073-429i10.3 269.19 2017.85 si:ch1073-429i10.3, transcript variant X2
47. rps27a ENSDARG00000032725, ENSDARG00000114059 265.14 1987.49 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
48. khdrbs1a ENSDARG00000052856 258.52 1937.87 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
49. rpl19 ENSDARG00000013307 255.57 1915.75 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
50. ptmaa ENSDARG00000021113, ENSDARG00000110479 254.83 1910.21 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
51. pcna ENSDARG00000054155 251.52 1885.39 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
52. rpl36a ENSDARG00000058105, ENSDARG00000112656 241.58 1810.88 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
53. eif5a ENSDARG00000017235 239.73 1797.02 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
54. rps2 ENSDARG00000077291 238.26 1786.00 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
55. rps26l ENSDARG00000030408 231.63 1736.30 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
56. rpl27 ENSDARG00000015128 230.90 1730.83 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
57. rps27.1 ENSDARG00000023298 230.16 1725.28 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
58. hnrnpa0a ENSDARG00000089302 229.79 1722.51 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
59. rps12 ENSDARG00000036875, ENSDARG00000115157 227.21 1703.17 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
60. rps14 ENSDARG00000036629 225.37 1689.37 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
61. rps4x ENSDARG00000014690 223.16 1672.81 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
62. rpl5b ENSDARG00000015862, ENSDARG00000109661 221.32 1659.01 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
63. hbae3 ENSDARG00000079305 219.85 1648.00 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
64. ran ENSDARG00000057026 218.38 1636.98 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
65. rplp0 ENSDARG00000051783 215.43 1614.86 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
66. rpl15 ENSDARG00000009285 213.59 1601.07 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
67. rps19 ENSDARG00000030602 207.33 1554.15 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
68. marcksl1b ENSDARG00000035715 205.49 1540.35 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
69. marcksb ENSDARG00000008803 205.12 1537.58 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
70. tuba8l ENSDARG00000042708 203.28 1523.79 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
71. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 200.70 1504.45 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
72. rps9 ENSDARG00000011405, ENSDARG00000113248 199.96 1498.90 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
73. rpl36 ENSDARG00000100588 199.59 1496.13 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
74. rps6 ENSDARG00000019778 198.12 1485.11 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
75. top1l ENSDARG00000070545 187.44 1405.05 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
76. rps10 ENSDARG00000034897 181.92 1363.67 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
77. mt-co1 ENSDARG00000063905 180.08 1349.88 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
78. pnrc2 ENSDARG00000053291, ENSDARG00000112537 179.34 1344.33 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
79. rps15 ENSDARG00000070849, ENSDARG00000110979 178.97 1341.56 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
80. tubb4b ENSDARG00000002344 177.13 1327.77 tubulin, beta 4B class IVb [Source:ZFIN;Acc:ZDB-GENE-030131-8625]
81. rpl18 ENSDARG00000029533 176.76 1324.99 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
82. h2afvb ENSDARG00000116491 171.98 1289.16 H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
83. ddx5 ENSDARG00000038068 171.24 1283.62 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
84. rps20 ENSDARG00000036044 171.24 1283.62 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
85. faua ENSDARG00000099022 169.03 1267.05 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
86. rplp2l ENSDARG00000011201 168.29 1261.50 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
87. rplp2 ENSDARG00000101406 166.82 1250.48 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
88. h3f3d ENSDARG00000045248 166.45 1247.71 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
89. nucks1a ENSDARG00000078473 165.35 1239.46 nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
90. rps24 ENSDARG00000039347 164.98 1236.69 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
91. ubc ENSDARG00000102632 164.98 1236.69 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
92. alyref ENSDARG00000077732 163.51 1225.67 Aly/REF export factor [Source:ZFIN;Acc:ZDB-GENE-070928-29]
93. rps15a ENSDARG00000010160 163.14 1222.90 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
94. fabp3 ENSDARG00000023290 162.77 1220.12 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
95. calm3a_1 ENSDARG00000015050, ENSDARG00000100825 160.19 1200.78 calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
96. marcksl1a ENSDARG00000039034 159.82 1198.01 MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
97. rpl17 ENSDARG00000057556 159.09 1192.54 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
98. krt8 ENSDARG00000058358, ENSDARG00000109279 154.67 1159.41 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
99. pbx4 ENSDARG00000052150 152.83 1145.61 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
100. rpl6 ENSDARG00000058451 151.72 1137.29 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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