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Experiment Zebrafish_40hpf_whole_embryo1, section s9.

Sample reads: 133,404. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 25139.53 188446.99
2. mt-co2 ENSDARG00000063908 1610.26 12070.58 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
3. si:dkey-151g10.6 si:dkey-151g10.6 1480.24 11095.94
4. tmsb4x ENSDARG00000077777 1377.98 10329.40 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. ptmab ENSDARG00000101766 1324.76 9930.46 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
6. zgc:112425 zgc:112425 1238.70 9285.35
7. ppiaa ENSDARG00000009212 970.78 7277.01 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
8. hmgn2 ENSDARG00000099572 930.07 6971.84 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
9. krt4 ENSDARG00000017624, ENSDARG00000115790 883.33 6621.48 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
10. hmga1a ENSDARG00000028335 813.00 6094.28 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
11. eef1a1l1 ENSDARG00000020850 671.41 5032.92 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
12. rpl23 ENSDARG00000053457 627.91 4706.84 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
13. mt-co3 ENSDARG00000063912 566.37 4245.53 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
14. h3f3a 546.93 4099.81 H3 histone, family 3A, transcript variant X1
15. AL954137.2 ENSDARG00000114408 517.78 3881.30
16. actb2 ENSDARG00000037870 483.08 3621.19 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
17. hspa8 ENSDARG00000068992, ENSDARG00000114726 481.69 3610.77 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
18. rpl10a ENSDARG00000042905, ENSDARG00000115649 477.99 3583.03 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
19. mt-atp6 ENSDARG00000063911 469.20 3517.14 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
20. rpl36a ENSDARG00000058105, ENSDARG00000112656 452.08 3388.81 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
21. cirbp cirbp 447.91 3357.55
22. rps23 ENSDARG00000021838 442.36 3315.95 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
23. rpl11 ENSDARG00000043509 433.57 3250.06 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
24. rps20 ENSDARG00000036044 424.31 3180.65 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
25. rps15 ENSDARG00000070849, ENSDARG00000110979 403.49 3024.58 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
26. mt-nd4 ENSDARG00000063917 374.34 2806.07 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
27. mt-nd2 ENSDARG00000063899 366.94 2750.60 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
28. mt-cyb ENSDARG00000063924 356.76 2674.29 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
29. khdrbs1a ENSDARG00000052856 353.52 2650.00 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
30. si:dkeyp-86f7.3 si:dkeyp-86f7.3 347.96 2608.32
31. pnrc2 ENSDARG00000053291, ENSDARG00000112537 338.71 2538.98 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
32. pcna ENSDARG00000054155 328.07 2459.23 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
33. hsp90ab1 ENSDARG00000029150 327.14 2452.26 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
34. rpl27 ENSDARG00000015128 318.81 2389.81 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
35. rpl9 ENSDARG00000037350, ENSDARG00000112384 317.89 2382.92 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
36. rps27.1 ENSDARG00000023298 313.72 2351.66 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
37. rplp2 ENSDARG00000101406 312.80 2344.76 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
38. mt-co1 ENSDARG00000063905 312.34 2341.31 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
39. actb1 ENSDARG00000037746, ENSDARG00000113649 310.02 2323.92 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
40. rps15a ENSDARG00000010160 305.39 2289.22 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
41. cfl1 ENSDARG00000021124 303.08 2271.90 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
42. hnrnpab hnrnpab 301.69 2261.48
43. ptmaa ENSDARG00000021113, ENSDARG00000110479 291.51 2185.17 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
44. btf3 ENSDARG00000035400, ENSDARG00000116462 280.41 2101.97 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
45. rps24 ENSDARG00000039347 279.95 2098.52 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
46. eef2b ENSDARG00000100371, ENSDARG00000109247 277.63 2081.13 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
47. mt-nd1 ENSDARG00000063895 276.24 2070.71 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
48. fkbp1aa ENSDARG00000022684 273.93 2053.39 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
49. rps14 ENSDARG00000036629 273.93 2053.39 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
50. rps27a ENSDARG00000032725, ENSDARG00000114059 266.06 1994.40 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
51. hnrnpa0a ENSDARG00000089302 264.21 1980.53 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
52. rpl7 ENSDARG00000007320 262.36 1966.66 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
53. rpl36 ENSDARG00000100588 260.97 1956.24 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
54. rps9 ENSDARG00000011405, ENSDARG00000113248 260.05 1949.35 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
55. id1 ENSDARG00000040764 251.72 1886.90 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
56. rpl38 ENSDARG00000006413 251.72 1886.90 ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-030131-8752]
57. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 248.48 1862.62 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
58. faua ENSDARG00000099022 247.09 1852.20 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
59. rplp1 ENSDARG00000021864 245.70 1841.78 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
60. rpl21 ENSDARG00000010516, ENSDARG00000110263 242.93 1821.01 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
61. si:ch1073-429i10.3 242.00 1814.04 si:ch1073-429i10.3, transcript variant X2
62. eef1g ENSDARG00000056119 241.08 1807.15 eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
63. rps12 ENSDARG00000036875, ENSDARG00000115157 239.23 1793.28 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
64. marcksb ENSDARG00000008803 234.60 1758.57 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
65. rpl8 ENSDARG00000014867 233.21 1748.15 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
66. h2afvb ENSDARG00000116491 223.96 1678.81 H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
67. rps19 ENSDARG00000030602 220.72 1654.53 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
68. marcksl1b ENSDARG00000035715 218.87 1640.66 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
69. rps5 ENSDARG00000043453 217.48 1630.24 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
70. rpl30 ENSDARG00000035871, ENSDARG00000109253 216.09 1619.82 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
71. rps7 ENSDARG00000042566 213.31 1598.98 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
72. rpl19 ENSDARG00000013307 209.15 1567.80 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
73. nucks1a ENSDARG00000078473 207.30 1553.93 nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
74. rpl18a ENSDARG00000025073 205.91 1543.51 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
75. rps2 ENSDARG00000077291 200.82 1505.36 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
76. rpl22 ENSDARG00000070437 195.27 1463.75 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
77. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 195.27 1463.75 ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
78. fabp3 ENSDARG00000023290 194.80 1460.23 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
79. RPL29 ENSDARG00000077717 192.49 1442.91 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
80. stmn1b ENSDARG00000033655 192.49 1442.91 stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
81. eif5a ENSDARG00000017235 190.64 1429.05 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
82. rpl26 ENSDARG00000102317 189.71 1422.07 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
83. rpl39 ENSDARG00000036316, ENSDARG00000117167 189.71 1422.07 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
84. marcksl1a ENSDARG00000039034 188.79 1415.18 MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
85. TUBA1A ENSDARG00000001889 186.94 1401.31 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
86. rpl35a ENSDARG00000088030 179.54 1345.84 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
87. rpl15 ENSDARG00000009285 178.61 1338.87 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
88. rpl5b ENSDARG00000015862, ENSDARG00000109661 177.22 1328.45 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
89. rpl35 ENSDARG00000018334 173.06 1297.27 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
90. rpl28 ENSDARG00000005791 170.28 1276.43 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
91. ywhabl ENSDARG00000040287 169.36 1269.53 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like [Source:ZFIN;Acc:ZDB-GENE-030131-448]
92. rps26l ENSDARG00000030408 167.97 1259.11 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
93. rpl14 ENSDARG00000103433 167.50 1255.59 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
94. rpsa ENSDARG00000019181 167.04 1252.14 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
95. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 164.27 1231.37 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
96. rpl22l1 ENSDARG00000010244 162.88 1220.96 ribosomal protein L22-like 1 [Source:ZFIN;Acc:ZDB-GENE-060804-3]
97. rpl24 ENSDARG00000099104 160.56 1203.56 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
98. eif5a2 ENSDARG00000056186 159.64 1196.67 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
99. rps6 ENSDARG00000019778 159.64 1196.67 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
100. RPL37A RPL37A 157.79 1182.80
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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