Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s8.

Sample reads: 133,413. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 28517.19 213750.89
2. ptmab ENSDARG00000101766 1329.59 9965.96 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
3. zgc:112425 zgc:112425 1271.60 9531.29
4. si:dkey-151g10.6 si:dkey-151g10.6 1265.91 9488.64
5. mt-co2 ENSDARG00000063908 1123.40 8420.46 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. tmsb4x ENSDARG00000077777 878.94 6588.10 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
7. ppiaa ENSDARG00000009212 864.92 6483.02 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
8. hmgn2 ENSDARG00000099572 841.42 6306.87 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
9. eef1a1l1 ENSDARG00000020850 803.14 6019.94 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
10. hmga1a ENSDARG00000028335 775.47 5812.54 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
11. rpl23 ENSDARG00000053457 674.65 5056.85 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
12. actb2 ENSDARG00000037870 553.74 4150.56 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
13. AL954137.2 ENSDARG00000114408 521.91 3911.98
14. h3f3a 507.88 3806.82 H3 histone, family 3A, transcript variant X1
15. rpl10a ENSDARG00000042905, ENSDARG00000115649 506.37 3795.50 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
16. mt-co3 ENSDARG00000063912 499.54 3744.31 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
17. mt-atp6 ENSDARG00000063911 446.48 3346.60 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
18. cirbp cirbp 404.79 3034.11
19. hsp90ab1 ENSDARG00000029150 403.27 3022.71 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
20. hspa8 ENSDARG00000068992, ENSDARG00000114726 379.40 2843.80 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
21. rpl11 ENSDARG00000043509 370.68 2778.44 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
22. rpl36a ENSDARG00000058105, ENSDARG00000112656 369.92 2772.74 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
23. khdrbs1a ENSDARG00000052856 363.10 2721.62 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
24. hnrnpab hnrnpab 361.96 2713.07
25. mt-nd2 ENSDARG00000063899 360.07 2698.91 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
26. rps23 ENSDARG00000021838 357.41 2678.97 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
27. si:dkeyp-86f7.3 si:dkeyp-86f7.3 352.49 2642.09
28. cfl1 ENSDARG00000021124 341.49 2559.64 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
29. eef2b ENSDARG00000100371, ENSDARG00000109247 336.95 2525.61 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
30. rps20 ENSDARG00000036044 332.78 2494.36 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
31. marcksb ENSDARG00000008803 325.20 2437.54 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
32. krt4 ENSDARG00000017624, ENSDARG00000115790 318.75 2389.19 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
33. rps27.1 ENSDARG00000023298 318.37 2386.35 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
34. fkbp1aa ENSDARG00000022684 313.45 2349.47 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
35. pnrc2 ENSDARG00000053291, ENSDARG00000112537 311.55 2335.23 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
36. rpl9 ENSDARG00000037350, ENSDARG00000112384 305.87 2292.65 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
37. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 303.97 2278.41 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
38. ptmaa ENSDARG00000021113, ENSDARG00000110479 297.15 2227.29 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
39. rps15 ENSDARG00000070849, ENSDARG00000110979 294.87 2210.20 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
40. rps15a ENSDARG00000010160 293.36 2198.88 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
41. btf3 ENSDARG00000035400, ENSDARG00000116462 291.46 2184.64 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
42. pcna ENSDARG00000054155 291.08 2181.79 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
43. hnrnpa0a ENSDARG00000089302 290.71 2179.02 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
44. mt-nd4 ENSDARG00000063917 288.05 2159.08 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
45. actb1 ENSDARG00000037746, ENSDARG00000113649 286.16 2144.92 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
46. h2afvb ENSDARG00000116491 284.64 2133.52 H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
47. rplp1 ENSDARG00000021864 278.20 2085.25 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
48. rpl27 ENSDARG00000015128 275.17 2062.54 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
49. mt-cyb ENSDARG00000063924 271.75 2036.90 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
50. rpl8 ENSDARG00000014867 271.00 2031.28 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
51. id1 ENSDARG00000040764 269.86 2022.74 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
52. rpl18a ENSDARG00000025073 269.86 2022.74 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
53. rpl21 ENSDARG00000010516, ENSDARG00000110263 269.10 2017.04 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
54. h3f3d ENSDARG00000045248 260.76 1954.53 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
55. rpl36 ENSDARG00000100588 255.84 1917.65 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
56. rps27a ENSDARG00000032725, ENSDARG00000114059 253.18 1897.71 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
57. mt-co1 ENSDARG00000063905 251.67 1886.40 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
58. rps24 ENSDARG00000039347 250.91 1880.70 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
59. marcksl1b ENSDARG00000035715 250.53 1877.85 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
60. rps9 ENSDARG00000011405, ENSDARG00000113248 250.53 1877.85 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
61. faua ENSDARG00000099022 242.57 1818.19 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
62. rps12 ENSDARG00000036875, ENSDARG00000115157 235.75 1767.07 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
63. rps2 ENSDARG00000077291 233.85 1752.83 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
64. mt-nd1 ENSDARG00000063895 233.47 1749.98 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
65. zgc:123194 zgc:123194 231.20 1732.96
66. rplp2 ENSDARG00000101406 230.06 1724.42 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
67. rps14 ENSDARG00000036629 227.41 1704.55 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
68. rpl26 ENSDARG00000102317 225.51 1690.31 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
69. TUBA1A ENSDARG00000001889 224.76 1684.69 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
70. eif5a ENSDARG00000017235 219.45 1644.89 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
71. rps19 ENSDARG00000030602 218.31 1636.34 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
72. nucks1a ENSDARG00000078473 215.66 1616.48 nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
73. rps5 ENSDARG00000043453 213.39 1599.47 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
74. rpl35 ENSDARG00000018334 208.84 1565.36 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
75. stmn1b ENSDARG00000033655 205.81 1542.65 stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
76. si:ch1073-429i10.3 203.91 1528.41 si:ch1073-429i10.3, transcript variant X2
77. eef1g ENSDARG00000056119 200.88 1505.70 eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
78. rpl18 ENSDARG00000029533 200.88 1505.70 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
79. rpl7 ENSDARG00000007320 199.74 1497.15 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
80. rpl19 ENSDARG00000013307 197.47 1480.14 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
81. rps7 ENSDARG00000042566 197.09 1477.29 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
82. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 190.27 1426.17 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
83. rpl5b ENSDARG00000015862, ENSDARG00000109661 189.51 1420.47 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
84. rpl35a ENSDARG00000088030 185.72 1392.07 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
85. rpl38 ENSDARG00000006413 182.69 1369.35 ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-030131-8752]
86. rpsa ENSDARG00000019181 182.31 1366.51 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
87. rps29 ENSDARG00000041232 181.55 1360.81 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
88. rpl30 ENSDARG00000035871, ENSDARG00000109253 179.65 1346.57 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
89. RPL29 ENSDARG00000077717 174.73 1309.69 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
90. rps6 ENSDARG00000019778 173.97 1303.99 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
91. ran ENSDARG00000057026 171.69 1286.90 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
92. rps18 ENSDARG00000100392 171.32 1284.13 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
93. marcksl1a ENSDARG00000039034 168.28 1261.34 MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
94. ywhabl ENSDARG00000040287 167.90 1258.50 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like [Source:ZFIN;Acc:ZDB-GENE-030131-448]
95. tuba8l4 ENSDARG00000006260 167.53 1255.72 tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860]
96. seta ENSDARG00000031495 167.15 1252.87 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
97. celf2 ENSDARG00000002131, ENSDARG00000110267 166.39 1247.18 cugbp, Elav-like family member 2 [Source:ZFIN;Acc:ZDB-GENE-030826-35]
98. rpl22 ENSDARG00000070437 165.63 1241.48 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
99. tubb4b ENSDARG00000002344 162.60 1218.77 tubulin, beta 4B class IVb [Source:ZFIN;Acc:ZDB-GENE-030131-8625]
100. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 160.70 1204.53 ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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