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Experiment Zebrafish_40hpf_whole_embryo1, section s71.

Sample reads: 133,395. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. krt4 ENSDARG00000017624, ENSDARG00000115790 9921.64 74378.05 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
2. AC024175.4 AC024175.4 7356.95 55151.73
3. col1a1a ENSDARG00000012405, ENSDARG00000116113 4960.40 37185.88 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
4. tmsb4x ENSDARG00000077777 3254.30 24396.02 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. actb1 ENSDARG00000037746, ENSDARG00000113649 1508.09 11305.47 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
6. actb2 ENSDARG00000037870 1503.82 11273.46 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
7. and1 ENSDARG00000088514 1338.25 10032.26 actinodin1 [Source:ZFIN;Acc:ZDB-GENE-030131-9105]
8. and2 ENSDARG00000079302 1016.49 7620.17 actinodin2 [Source:ZFIN;Acc:ZDB-GENE-041105-2]
9. col1a1b ENSDARG00000035809 914.93 6858.82 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
10. CABZ01074130.1 ENSDARG00000105274 887.61 6654.01
11. mt-co2 ENSDARG00000063908 771.54 5783.89 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
12. icn ENSDARG00000009978 729.72 5470.38 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
13. zgc:92533 zgc:92533 722.89 5419.18
14. eef1a1l1 ENSDARG00000020850 713.50 5348.79 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
15. cfl1l ENSDARG00000012972 693.02 5195.26 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
16. si:dkey-151g10.6 si:dkey-151g10.6 587.19 4401.90
17. pfn1 ENSDARG00000088091 544.52 4082.02 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
18. zgc:112425 zgc:112425 536.84 4024.45
19. mt-co3 ENSDARG00000063912 530.86 3979.62 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
20. ptmab ENSDARG00000101766 518.91 3890.03 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
21. and3 ENSDARG00000056873 517.21 3877.29 actinodin3 [Source:ZFIN;Acc:ZDB-GENE-040724-185]
22. cyt1l ENSDARG00000036832 515.50 3864.47 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
23. hmga1a ENSDARG00000028335 494.16 3704.49 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
24. krt8 ENSDARG00000058358, ENSDARG00000109279 451.49 3384.62 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
25. mt-atp6 ENSDARG00000063911 442.95 3320.60 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
26. ppiaa ENSDARG00000009212 433.57 3250.28 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
27. im:7150988 ENSDARG00000109310 425.88 3192.63 im:7150988 [Source:ZFIN;Acc:ZDB-GENE-050309-169]
28. mt-nd4 ENSDARG00000063917 407.96 3058.29 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
29. rpl10a ENSDARG00000042905, ENSDARG00000115649 405.40 3039.10 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
30. mt-nd2 ENSDARG00000063899 395.16 2962.34 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
31. col1a2 ENSDARG00000020007 385.77 2891.94 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
32. rpl23 ENSDARG00000053457 341.39 2559.25 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
33. id1 ENSDARG00000040764 331.15 2482.48 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
34. mt-cyb ENSDARG00000063924 306.40 2296.94 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
35. hspa8 ENSDARG00000068992, ENSDARG00000114726 302.98 2271.30 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
36. krt18 ENSDARG00000018404, ENSDARG00000109528 292.74 2194.54 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
37. icn2 ENSDARG00000055514 285.91 2143.34 ictacalcin 2 [Source:ZFIN;Acc:ZDB-GENE-070822-9]
38. sparc ENSDARG00000019353 284.21 2130.59 secreted protein, acidic, cysteine-rich (osteonectin) [Source:ZFIN;Acc:ZDB-GENE-030131-9]
39. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 283.35 2124.15 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
40. s100a10b ENSDARG00000025254 282.50 2117.77 S100 calcium binding protein A10b [Source:ZFIN;Acc:ZDB-GENE-040426-1937]
41. tpm3 ENSDARG00000005162 274.82 2060.20 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
42. hmgn2 ENSDARG00000099572 259.46 1945.05 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
43. eef2b ENSDARG00000100371, ENSDARG00000109247 251.78 1887.48 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
44. mt-co1 ENSDARG00000063905 249.21 1868.21 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
45. col2a1a ENSDARG00000069093, ENSDARG00000111202 244.95 1836.28 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
46. mt-nd1 ENSDARG00000063895 244.95 1836.28 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
47. myl12.1 ENSDARG00000099766 241.53 1810.64 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
48. rpl8 ENSDARG00000014867 241.53 1810.64 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
49. zgc:153129 zgc:153129 240.68 1804.27
50. rpl9 ENSDARG00000037350, ENSDARG00000112384 239.83 1797.90 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
51. rps23 ENSDARG00000021838 238.12 1785.08 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
52. AL954137.2 ENSDARG00000114408 233.00 1746.70
53. rpl36a ENSDARG00000058105, ENSDARG00000112656 227.88 1708.31 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
54. si:dkeyp-86f7.3 si:dkeyp-86f7.3 220.20 1650.74
55. zgc:66286 zgc:66286 216.78 1625.10
56. eif5a ENSDARG00000017235 213.37 1599.54 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
57. rps27a ENSDARG00000032725, ENSDARG00000114059 213.37 1599.54 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
58. ywhabl ENSDARG00000040287 212.52 1593.17 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like [Source:ZFIN;Acc:ZDB-GENE-030131-448]
59. rplp1 ENSDARG00000021864 210.81 1580.35 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
60. serpinh1b ENSDARG00000019949 210.81 1580.35 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b [Source:ZFIN;Acc:ZDB-GENE-990415-93]
61. rpl18a ENSDARG00000025073 207.39 1554.71 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
62. zgc:165571 zgc:165571 203.98 1529.15
63. rpl26 ENSDARG00000102317 200.57 1503.58 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
64. si:ch1073-429i10.3 200.57 1503.58 si:ch1073-429i10.3, transcript variant X2
65. FP067396.1 FP067396.1 199.71 1497.14
66. hsp90ab1 ENSDARG00000029150 197.15 1477.94 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
67. rpl21 ENSDARG00000010516, ENSDARG00000110263 194.59 1458.75 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
68. myl10 ENSDARG00000062592 192.89 1446.01 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
69. rps9 ENSDARG00000011405, ENSDARG00000113248 192.89 1446.01 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
70. zgc:92061 zgc:92061 192.89 1446.01
71. col5a1 ENSDARG00000012593 191.18 1433.19 procollagen, type V, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-041105-6]
72. rpl11 ENSDARG00000043509 191.18 1433.19 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
73. rps20 ENSDARG00000036044 190.32 1426.74 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
74. col11a1a ENSDARG00000026165, ENSDARG00000115341 188.62 1414.00 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
75. rps2 ENSDARG00000077291 188.62 1414.00 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
76. btf3 ENSDARG00000035400, ENSDARG00000116462 187.76 1407.55 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
77. myh9a ENSDARG00000063295 185.20 1388.36 myosin, heavy chain 9a, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-5870]
78. bcam ENSDARG00000090190 183.50 1375.62 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
79. rpl36 ENSDARG00000100588 183.50 1375.62 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
80. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 181.79 1362.80 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
81. fkbp1aa ENSDARG00000022684 180.08 1349.98 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
82. rpl19 ENSDARG00000013307 179.23 1343.61 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
83. wu:fb17f05 wu:fb17f05 179.23 1343.61
84. rpl18 ENSDARG00000029533 178.38 1337.23 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
85. rpl27 ENSDARG00000015128 177.52 1330.79 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
86. rps27.1 ENSDARG00000023298 177.52 1330.79 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
87. rps15 ENSDARG00000070849, ENSDARG00000110979 173.26 1298.85 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
88. pnrc2 ENSDARG00000053291, ENSDARG00000112537 172.40 1292.40 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
89. rps26l ENSDARG00000030408 171.55 1286.03 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
90. faua ENSDARG00000099022 169.84 1273.21 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
91. rps5 ENSDARG00000043453 163.87 1228.46 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
92. postnb ENSDARG00000104267 161.31 1209.27 periostin, osteoblast specific factor b [Source:ZFIN;Acc:ZDB-GENE-030131-9120]
93. eef1g ENSDARG00000056119 158.75 1190.08 eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
94. rplp2 ENSDARG00000101406 158.75 1190.08 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
95. rbp4 ENSDARG00000101199 157.89 1183.63 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
96. rps12 ENSDARG00000036875, ENSDARG00000115157 157.89 1183.63 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
97. zgc:153867 157.89 1183.63 zgc:153867, transcript variant X2
98. h3f3a 156.19 1170.89 H3 histone, family 3A, transcript variant X1
99. rps15a ENSDARG00000010160 156.19 1170.89 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
100. tuba8l ENSDARG00000042708 156.19 1170.89 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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