Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s70.

Sample reads: 133,396. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. krt4 ENSDARG00000017624, ENSDARG00000115790 9988.58 74878.93 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
2. tmsb4x ENSDARG00000077777 3880.29 29088.42 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
3. AC024175.4 AC024175.4 3595.76 26955.45
4. col1a1a ENSDARG00000012405, ENSDARG00000116113 1653.95 12398.76 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
5. and1 ENSDARG00000088514 1291.21 9679.50 actinodin1 [Source:ZFIN;Acc:ZDB-GENE-030131-9105]
6. actb2 ENSDARG00000037870 1046.61 7845.86 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
7. mt-co2 ENSDARG00000063908 1021.65 7658.75 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. and2 ENSDARG00000079302 981.72 7359.42 actinodin2 [Source:ZFIN;Acc:ZDB-GENE-041105-2]
9. icn ENSDARG00000009978 901.85 6760.68 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
10. zgc:112425 zgc:112425 783.71 5875.05
11. si:dkey-151g10.6 si:dkey-151g10.6 765.41 5737.86
12. cfl1l ENSDARG00000012972 698.85 5238.90 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
13. eef1a1l1 ENSDARG00000020850 680.55 5101.71 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
14. ppiaa ENSDARG00000009212 672.23 5039.34 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
15. zgc:92533 zgc:92533 662.24 4964.45
16. col1a1b ENSDARG00000035809 655.59 4914.60 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
17. mt-co3 ENSDARG00000063912 564.07 4228.52 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. actb1 ENSDARG00000037746, ENSDARG00000113649 554.09 4153.71 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
19. mt-nd2 ENSDARG00000063899 514.15 3854.30 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
20. mt-nd4 ENSDARG00000063917 487.53 3654.75 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
21. and3 ENSDARG00000056873 460.91 3455.19 actinodin3 [Source:ZFIN;Acc:ZDB-GENE-040724-185]
22. hspa8 ENSDARG00000068992, ENSDARG00000114726 449.26 3367.86 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
23. hmga1a ENSDARG00000028335 445.93 3342.89 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
24. mt-atp6 ENSDARG00000063911 439.28 3293.04 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
25. CABZ01074130.1 ENSDARG00000105274 435.95 3268.08
26. mt-nd1 ENSDARG00000063895 429.29 3218.15 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
27. cyt1l ENSDARG00000036832 425.97 3193.26 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
28. rpl10a ENSDARG00000042905, ENSDARG00000115649 412.66 3093.49 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
29. myl10 ENSDARG00000062592 409.33 3068.52 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
30. hmgn2 ENSDARG00000099572 407.66 3056.00 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
31. zgc:66286 zgc:66286 394.35 2956.23
32. ptmab ENSDARG00000101766 392.69 2943.78 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
33. icn2 ENSDARG00000055514 339.44 2544.60 ictacalcin 2 [Source:ZFIN;Acc:ZDB-GENE-070822-9]
34. mt-co1 ENSDARG00000063905 339.44 2544.60 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
35. rpl9 ENSDARG00000037350, ENSDARG00000112384 332.79 2494.74 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
36. mt-cyb ENSDARG00000063924 324.47 2432.37 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
37. tpm3 ENSDARG00000005162 319.47 2394.89 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
38. im:7150988 ENSDARG00000109310 297.84 2232.74 im:7150988 [Source:ZFIN;Acc:ZDB-GENE-050309-169]
39. rpl26 ENSDARG00000102317 297.84 2232.74 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
40. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 296.18 2220.30 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
41. postnb ENSDARG00000104267 294.52 2207.86 periostin, osteoblast specific factor b [Source:ZFIN;Acc:ZDB-GENE-030131-9120]
42. rbp4 ENSDARG00000101199 294.52 2207.86 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
43. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 289.52 2170.37 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
44. si:dkeyp-86f7.3 si:dkeyp-86f7.3 286.20 2145.49
45. rps27a ENSDARG00000032725, ENSDARG00000114059 284.53 2132.97 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
46. krt18 ENSDARG00000018404, ENSDARG00000109528 282.87 2120.52 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
47. rps23 ENSDARG00000021838 279.54 2095.56 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
48. pfn1 ENSDARG00000088091 274.55 2058.15 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
49. sparc ENSDARG00000019353 272.88 2045.63 secreted protein, acidic, cysteine-rich (osteonectin) [Source:ZFIN;Acc:ZDB-GENE-030131-9]
50. rpl36 ENSDARG00000100588 271.22 2033.19 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
51. rpl23 ENSDARG00000053457 267.89 2008.23 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
52. si:ch1073-429i10.3 266.23 1995.78 si:ch1073-429i10.3, transcript variant X2
53. smyhc1 ENSDARG00000099959, ENSDARG00000115916 261.24 1958.37 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
54. eef2b ENSDARG00000100371, ENSDARG00000109247 254.58 1908.45 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
55. rps26l ENSDARG00000030408 237.94 1783.71 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
56. rpl36a ENSDARG00000058105, ENSDARG00000112656 236.28 1771.26 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
57. ywhabl ENSDARG00000040287 234.61 1758.74 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like [Source:ZFIN;Acc:ZDB-GENE-030131-448]
58. actc1b ENSDARG00000099197 231.29 1733.85 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
59. rpl35 ENSDARG00000018334 231.29 1733.85 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
60. s100a10b ENSDARG00000025254 229.62 1721.34 S100 calcium binding protein A10b [Source:ZFIN;Acc:ZDB-GENE-040426-1937]
61. ckma ENSDARG00000035327, ENSDARG00000114671 227.96 1708.89 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
62. myl12.1 ENSDARG00000099766 227.96 1708.89 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
63. rpl27 ENSDARG00000015128 226.29 1696.37 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
64. rpl8 ENSDARG00000014867 222.97 1671.48 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
65. tpma ENSDARG00000033683 221.30 1658.97 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
66. ckmb ENSDARG00000040565 217.98 1634.08 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
67. rps24 ENSDARG00000039347 216.31 1621.56 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
68. col1a2 ENSDARG00000020007 214.65 1609.11 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
69. rpl18a ENSDARG00000025073 214.65 1609.11 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
70. myh9a ENSDARG00000063295 212.98 1596.59 myosin, heavy chain 9a, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-5870]
71. rpl19 ENSDARG00000013307 211.32 1584.15 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
72. acta1a ENSDARG00000036371 209.66 1571.71 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
73. bcam ENSDARG00000090190 206.33 1546.74 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
74. zgc:153129 zgc:153129 204.66 1534.22
75. rpl23a ENSDARG00000006316 199.67 1496.82 ribosomal protein L23a [Source:ZFIN;Acc:ZDB-GENE-030131-7479]
76. gch2 ENSDARG00000099101 198.01 1484.37 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
77. rps20 ENSDARG00000036044 194.68 1459.41 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
78. zgc:153867 189.69 1422.00 zgc:153867, transcript variant X2
79. calm3a_1 ENSDARG00000015050, ENSDARG00000100825 186.36 1397.04 calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
80. AL954137.2 ENSDARG00000114408 184.70 1384.60
81. FP067396.1 FP067396.1 181.37 1359.63
82. h3f3a 181.37 1359.63 H3 histone, family 3A, transcript variant X1
83. pcna ENSDARG00000054155 181.37 1359.63 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
84. apoeb ENSDARG00000040295 178.04 1334.67 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
85. rps15 ENSDARG00000070849, ENSDARG00000110979 176.38 1322.22 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
86. id1 ENSDARG00000040764 174.71 1309.71 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
87. hsp90ab1 ENSDARG00000029150 173.05 1297.26 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
88. col2a1a ENSDARG00000069093, ENSDARG00000111202 171.38 1284.74 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
89. rps15a ENSDARG00000010160 171.38 1284.74 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
90. cfl1 ENSDARG00000021124 169.72 1272.30 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
91. eef1g ENSDARG00000056119 169.72 1272.30 eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
92. eif5a ENSDARG00000017235 168.06 1259.85 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
93. rpl14 ENSDARG00000103433 166.39 1247.34 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
94. ahnak ENSDARG00000061764 164.73 1234.89 AHNAK nucleoprotein [Source:ZFIN;Acc:ZDB-GENE-030131-8719]
95. faua ENSDARG00000099022 164.73 1234.89 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
96. col9a1 col9a1 159.74 1197.48
97. fkbp1aa ENSDARG00000022684 159.74 1197.48 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
98. krt8 ENSDARG00000058358, ENSDARG00000109279 159.74 1197.48 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
99. pabpc1a ENSDARG00000017219 159.74 1197.48 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
100. rpl5b ENSDARG00000015862, ENSDARG00000109661 159.74 1197.48 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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