Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s7.

Sample reads: 133,410. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 31509.17 236182.65
2. tmsb4x ENSDARG00000077777 1551.43 11629.02 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
3. mt-co2 ENSDARG00000063908 1382.48 10362.63 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
4. si:dkey-151g10.6 si:dkey-151g10.6 1318.24 9881.11
5. ptmab ENSDARG00000101766 1240.90 9301.39 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
6. zgc:112425 zgc:112425 1018.42 7633.75
7. hmgn2 ENSDARG00000099572 916.10 6866.79 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
8. mt-co3 ENSDARG00000063912 580.59 4351.92 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
9. ppiaa ENSDARG00000009212 554.42 4155.75 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
10. hmga1a ENSDARG00000028335 534.19 4004.12 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
11. khdrbs1a ENSDARG00000052856 531.82 3986.35 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
12. eef1a1l1 ENSDARG00000020850 516.35 3870.39 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
13. AL954137.2 ENSDARG00000114408 500.88 3754.44
14. mt-atp6 ENSDARG00000063911 496.12 3718.76 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
15. ptmaa ENSDARG00000021113, ENSDARG00000110479 447.34 3353.12 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
16. mt-nd4 ENSDARG00000063917 439.02 3290.75 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
17. h3f3a 415.22 3112.36 H3 histone, family 3A, transcript variant X1
18. hspa8 ENSDARG00000068992, ENSDARG00000114726 409.27 3067.76 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
19. cirbp cirbp 408.08 3058.84
20. rpl23 ENSDARG00000053457 398.56 2987.48 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
21. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 397.37 2978.56 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
22. rps23 ENSDARG00000021838 377.15 2827.00 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
23. mt-nd2 ENSDARG00000063899 360.49 2702.12 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
24. rpl36a ENSDARG00000058105, ENSDARG00000112656 355.73 2666.44 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
25. hnrnpa0a ENSDARG00000089302 354.54 2657.52 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
26. hnrnpab hnrnpab 341.46 2559.47
27. rps20 ENSDARG00000036044 340.27 2550.55 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
28. mt-cyb ENSDARG00000063924 336.70 2523.80 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
29. rpl11 ENSDARG00000043509 322.42 2416.76 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
30. si:dkeyp-86f7.3 si:dkeyp-86f7.3 321.23 2407.84
31. krt4 ENSDARG00000017624, ENSDARG00000115790 316.47 2372.16 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
32. pnrc2 ENSDARG00000053291, ENSDARG00000112537 310.52 2327.56 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
33. marcksl1b ENSDARG00000035715 303.38 2274.04 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
34. rps24 ENSDARG00000039347 303.38 2274.04 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
35. rpl9 ENSDARG00000037350, ENSDARG00000112384 281.97 2113.56 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
36. actb1 ENSDARG00000037746, ENSDARG00000113649 270.07 2024.36 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
37. marcksb ENSDARG00000008803 268.88 2015.44 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
38. pcna ENSDARG00000054155 268.88 2015.44 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
39. zfhx4 ENSDARG00000075542 267.69 2006.52 zinc finger homeobox 4 [Source:ZFIN;Acc:ZDB-GENE-070530-3]
40. ccnd1 ENSDARG00000101637 252.23 1890.64 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
41. hsp90ab1 ENSDARG00000029150 249.85 1872.80 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
42. rpl38 ENSDARG00000006413 249.85 1872.80 ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-030131-8752]
43. cfl1 ENSDARG00000021124 248.66 1863.88 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
44. mt-nd1 ENSDARG00000063895 247.47 1854.96 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
45. celf2 ENSDARG00000002131, ENSDARG00000110267 246.28 1846.04 cugbp, Elav-like family member 2 [Source:ZFIN;Acc:ZDB-GENE-030826-35]
46. mt-co1 ENSDARG00000063905 236.76 1774.68 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
47. rpl27 ENSDARG00000015128 235.57 1765.76 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
48. rps15 ENSDARG00000070849, ENSDARG00000110979 235.57 1765.76 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
49. rps15a ENSDARG00000010160 232.00 1739.00 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
50. si:ch1073-429i10.3 229.62 1721.16 si:ch1073-429i10.3, transcript variant X2
51. rpl10a ENSDARG00000042905, ENSDARG00000115649 228.43 1712.24 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
52. stmn1b ENSDARG00000033655 228.43 1712.24 stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
53. marcksl1a ENSDARG00000039034 227.24 1703.32 MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
54. stmn1a ENSDARG00000004169 216.53 1623.04 stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
55. btf3 ENSDARG00000035400, ENSDARG00000116462 214.15 1605.20 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
56. rps27.1 ENSDARG00000023298 214.15 1605.20 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
57. rps14 ENSDARG00000036629 196.31 1471.48 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
58. mt-nd3 ENSDARG00000063914 193.93 1453.64 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
59. rps9 ENSDARG00000011405, ENSDARG00000113248 192.74 1444.72 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
60. top1l ENSDARG00000070545 192.74 1444.72 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
61. RPL29 ENSDARG00000077717 191.55 1435.80 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
62. ywhabl ENSDARG00000040287 189.17 1417.96 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like [Source:ZFIN;Acc:ZDB-GENE-030131-448]
63. ywhaba ENSDARG00000013078 187.98 1409.04 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide a [Source:ZFIN;Acc:ZDB-GENE-030131-6583]
64. rpl36 ENSDARG00000100588 185.60 1391.20 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
65. actb2 ENSDARG00000037870 179.65 1346.60 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
66. nucks1a ENSDARG00000078473 179.65 1346.60 nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
67. eef2b ENSDARG00000100371, ENSDARG00000109247 174.89 1310.92 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
68. eif5a2 ENSDARG00000056186 174.89 1310.92 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
69. hnrnpub ENSDARG00000004735 173.70 1302.00 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
70. tubb5 ENSDARG00000037997 166.56 1248.48 tubulin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-031110-4]
71. eef1g ENSDARG00000056119 164.18 1230.64 eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
72. rplp2 ENSDARG00000101406 162.99 1221.72 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
73. anp32a ENSDARG00000006487 158.24 1186.12 acidic (leucine-rich) nuclear phosphoprotein 32 family, member A [Source:ZFIN;Acc:ZDB-GENE-030131-7850]
74. rps12 ENSDARG00000036875, ENSDARG00000115157 154.67 1159.36 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
75. faua ENSDARG00000099022 153.48 1150.44 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
76. rpl7 ENSDARG00000007320 153.48 1150.44 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
77. whsc1l1 153.48 1150.44 Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X2
78. rpl30 ENSDARG00000035871, ENSDARG00000109253 151.10 1132.60 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
79. rps6 ENSDARG00000019778 151.10 1132.60 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
80. rpl39 ENSDARG00000036316, ENSDARG00000117167 149.91 1123.68 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
81. fabp3 ENSDARG00000023290 146.34 1096.92 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
82. rps7 ENSDARG00000042566 146.34 1096.92 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
83. TUBA1A ENSDARG00000001889 145.15 1088.00 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
84. hmgb1a ENSDARG00000099175, ENSDARG00000114353 143.96 1079.08 high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]
85. hp1bp3 ENSDARG00000044669 142.77 1070.16 heterochromatin protein 1, binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-060810-79]
86. pou3f1 ENSDARG00000009823, ENSDARG00000112302 142.77 1070.16 POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
87. rps27a ENSDARG00000032725, ENSDARG00000114059 142.77 1070.16 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
88. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 142.77 1070.16 ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
89. rpl22l1 ENSDARG00000010244 141.58 1061.24 ribosomal protein L22-like 1 [Source:ZFIN;Acc:ZDB-GENE-060804-3]
90. hmgb3a ENSDARG00000056725 139.20 1043.40 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
91. rpl22 ENSDARG00000070437 134.44 1007.72 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
92. pfn2l ENSDARG00000012682 130.87 980.96 profilin 2 like [Source:ZFIN;Acc:ZDB-GENE-030131-34]
93. tuba8l ENSDARG00000042708 129.68 972.04 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
94. HNRNPAB HNRNPAB 127.30 954.20
95. calm2a ENSDARG00000031427, ENSDARG00000111871 126.11 945.28 calmodulin 2a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030804-3]
96. fkbp1aa ENSDARG00000022684 126.11 945.28 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
97. id1 ENSDARG00000040764 126.11 945.28 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
98. rpl26 ENSDARG00000102317 124.92 936.36 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
99. eif5a ENSDARG00000017235 122.54 918.52 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
100. h2afvb ENSDARG00000116491 122.54 918.52 H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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