Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s69.

Sample reads: 133,409. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 16122.85 120852.70
2. krt4 ENSDARG00000017624, ENSDARG00000115790 8779.11 65805.93 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 2169.74 16263.81 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. col1a1a ENSDARG00000012405, ENSDARG00000116113 1749.15 13111.17 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
5. actb1 ENSDARG00000037746, ENSDARG00000113649 1495.45 11209.51 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
6. actb2 ENSDARG00000037870 1295.17 9708.26 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
7. mt-co2 ENSDARG00000063908 914.63 6855.83 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. col1a1b ENSDARG00000035809 774.43 5804.93 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
9. si:dkey-151g10.6 si:dkey-151g10.6 734.37 5504.65
10. zgc:92533 zgc:92533 734.37 5504.65
11. eef1a1l1 ENSDARG00000020850 721.02 5404.58 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
12. cfl1l ENSDARG00000012972 607.53 4553.89 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
13. icn ENSDARG00000009978 587.50 4403.75 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
14. and1 ENSDARG00000088514 540.77 4053.47 actinodin1 [Source:ZFIN;Acc:ZDB-GENE-030131-9105]
15. mt-atp6 ENSDARG00000063911 527.41 3953.33 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
16. zgc:112425 zgc:112425 520.74 3903.33
17. and2 ENSDARG00000079302 514.06 3853.26 actinodin2 [Source:ZFIN;Acc:ZDB-GENE-041105-2]
18. ppiaa ENSDARG00000009212 514.06 3853.26 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
19. mt-co3 ENSDARG00000063912 500.71 3753.19 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
20. mt-nd2 ENSDARG00000063899 467.33 3502.98 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
21. pfn1 ENSDARG00000088091 460.65 3452.91 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
22. ptmab ENSDARG00000101766 453.98 3402.92 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
23. cyt1l ENSDARG00000036832 427.27 3202.71 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
24. mt-nd4 ENSDARG00000063917 427.27 3202.71 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
25. rpl23 ENSDARG00000053457 427.27 3202.71 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
26. mt-cyb ENSDARG00000063924 413.92 3102.64 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
27. and3 ENSDARG00000056873 380.54 2852.43 actinodin3 [Source:ZFIN;Acc:ZDB-GENE-040724-185]
28. rps27a ENSDARG00000032725, ENSDARG00000114059 380.54 2852.43 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
29. rpl10a ENSDARG00000042905, ENSDARG00000115649 367.19 2752.36 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
30. rpl9 ENSDARG00000037350, ENSDARG00000112384 367.19 2752.36 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
31. actc1b ENSDARG00000099197 360.51 2702.29 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
32. mt-nd1 ENSDARG00000063895 327.13 2452.08 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
33. rplp1 ENSDARG00000021864 327.13 2452.08 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
34. hspa8 ENSDARG00000068992, ENSDARG00000114726 313.78 2352.01 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
35. rpl26 ENSDARG00000102317 313.78 2352.01 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
36. rpl8 ENSDARG00000014867 313.78 2352.01 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
37. eif5a ENSDARG00000017235 307.10 2301.94 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
38. hmga1a ENSDARG00000028335 307.10 2301.94 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
39. zgc:66286 zgc:66286 300.43 2251.95
40. CABZ01074130.1 ENSDARG00000105274 293.75 2201.87
41. rpl36a ENSDARG00000058105, ENSDARG00000112656 293.75 2201.87 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
42. ckmb ENSDARG00000040565 287.07 2151.80 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
43. krt8 ENSDARG00000058358, ENSDARG00000109279 287.07 2151.80 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
44. rpl11 ENSDARG00000043509 287.07 2151.80 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
45. id1 ENSDARG00000040764 280.40 2101.81 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
46. s100a10b ENSDARG00000025254 280.40 2101.81 S100 calcium binding protein A10b [Source:ZFIN;Acc:ZDB-GENE-040426-1937]
47. myl10 ENSDARG00000062592 273.72 2051.73 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
48. sparc ENSDARG00000019353 273.72 2051.73 secreted protein, acidic, cysteine-rich (osteonectin) [Source:ZFIN;Acc:ZDB-GENE-030131-9]
49. rps26l ENSDARG00000030408 267.05 2001.74 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
50. rps4x ENSDARG00000014690 267.05 2001.74 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
51. icn2 ENSDARG00000055514 260.37 1951.67 ictacalcin 2 [Source:ZFIN;Acc:ZDB-GENE-070822-9]
52. zgc:153129 zgc:153129 260.37 1951.67
53. eef2b ENSDARG00000100371, ENSDARG00000109247 247.02 1851.60 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
54. hmgn2 ENSDARG00000099572 247.02 1851.60 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
55. im:7150988 ENSDARG00000109310 247.02 1851.60 im:7150988 [Source:ZFIN;Acc:ZDB-GENE-050309-169]
56. rpl19 ENSDARG00000013307 247.02 1851.60 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
57. rps6 ENSDARG00000019778 247.02 1851.60 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
58. AL954137.2 ENSDARG00000114408 240.34 1801.53
59. bcam ENSDARG00000090190 240.34 1801.53 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
60. rpl7 ENSDARG00000007320 240.34 1801.53 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
61. rps23 ENSDARG00000021838 240.34 1801.53 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
62. rps7 ENSDARG00000042566 240.34 1801.53 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
63. rps9 ENSDARG00000011405, ENSDARG00000113248 240.34 1801.53 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
64. btf3 ENSDARG00000035400, ENSDARG00000116462 233.66 1751.45 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
65. rpl27 ENSDARG00000015128 226.99 1701.46 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
66. rps10 ENSDARG00000034897 226.99 1701.46 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
67. zgc:165571 zgc:165571 226.99 1701.46
68. ckma ENSDARG00000035327, ENSDARG00000114671 220.31 1651.39 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
69. col1a2 ENSDARG00000020007 220.31 1651.39 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
70. rpl18a ENSDARG00000025073 220.31 1651.39 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
71. si:ch1073-429i10.3 220.31 1651.39 si:ch1073-429i10.3, transcript variant X2
72. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 220.31 1651.39 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
73. marcksl1a ENSDARG00000039034 213.64 1601.39 MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
74. mt-co1 ENSDARG00000063905 213.64 1601.39 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
75. rps24 ENSDARG00000039347 213.64 1601.39 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
76. rpl18 ENSDARG00000029533 206.96 1551.32 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
77. rps15 ENSDARG00000070849, ENSDARG00000110979 206.96 1551.32 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
78. rps27.1 ENSDARG00000023298 206.96 1551.32 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
79. cirbp cirbp 200.28 1501.25
80. faua ENSDARG00000099022 200.28 1501.25 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
81. rpl21 ENSDARG00000010516, ENSDARG00000110263 200.28 1501.25 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
82. rplp2 ENSDARG00000101406 200.28 1501.25 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
83. rps2 ENSDARG00000077291 200.28 1501.25 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
84. fkbp1aa ENSDARG00000022684 193.61 1451.25 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
85. h3f3a 193.61 1451.25 H3 histone, family 3A, transcript variant X1
86. myl12.1 ENSDARG00000099766 193.61 1451.25 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
87. si:dkeyp-86f7.3 si:dkeyp-86f7.3 193.61 1451.25
88. tuba8l4 ENSDARG00000006260 193.61 1451.25 tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860]
89. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 186.93 1401.18 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
90. hsp90ab1 ENSDARG00000029150 186.93 1401.18 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
91. rpl35 ENSDARG00000018334 186.93 1401.18 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
92. rps20 ENSDARG00000036044 186.93 1401.18 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
93. tpma ENSDARG00000033683 186.93 1401.18 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
94. ywhabl ENSDARG00000040287 186.93 1401.18 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like [Source:ZFIN;Acc:ZDB-GENE-030131-448]
95. acta1a ENSDARG00000036371 180.26 1351.18 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
96. atp2a1 ENSDARG00000020574 180.26 1351.18 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
97. khdrbs1a ENSDARG00000052856 180.26 1351.18 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
98. krt18 ENSDARG00000018404, ENSDARG00000109528 180.26 1351.18 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
99. rps12 ENSDARG00000036875, ENSDARG00000115157 180.26 1351.18 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
100. rps5 ENSDARG00000043453 180.26 1351.18 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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