Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Zebrafish_40hpf_whole_embryo1, section s68.

Sample reads: 133,410. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 13562.95 101663.39
2. krt4 ENSDARG00000017624, ENSDARG00000115790 8344.54 62547.92 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 2378.32 17827.10 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. col1a1a ENSDARG00000012405, ENSDARG00000116113 1659.10 12436.07 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
5. actb2 ENSDARG00000037870 1262.72 9464.93 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
6. mt-co2 ENSDARG00000063908 1168.73 8760.41 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. actb1 ENSDARG00000037746, ENSDARG00000113649 1123.78 8423.48 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
8. col1a1b ENSDARG00000035809 952.14 7136.93 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
9. mt-co3 ENSDARG00000063912 719.22 5391.04 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
10. zgc:92533 zgc:92533 670.18 5023.45
11. zgc:112425 zgc:112425 653.83 4900.89
12. mt-atp6 ENSDARG00000063911 633.40 4747.76 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. ckmb ENSDARG00000040565 625.23 4686.52 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
14. hmga1a ENSDARG00000028335 617.05 4625.20 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
15. mt-nd2 ENSDARG00000063899 604.80 4533.38 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
16. eef1a1l1 ENSDARG00000020850 588.45 4410.83 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
17. tpma ENSDARG00000033683 559.84 4196.38 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
18. ppiaa ENSDARG00000009212 527.15 3951.34 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
19. mt-nd1 ENSDARG00000063895 514.89 3859.45 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
20. mt-nd4 ENSDARG00000063917 494.46 3706.31 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
21. si:dkey-151g10.6 si:dkey-151g10.6 445.42 3338.72
22. and1 ENSDARG00000088514 437.25 3277.48 actinodin1 [Source:ZFIN;Acc:ZDB-GENE-030131-9105]
23. cfl1l ENSDARG00000012972 424.99 3185.58 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
24. icn ENSDARG00000009978 416.82 3124.35 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
25. ptmab ENSDARG00000101766 412.73 3093.69 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
26. rpl10a ENSDARG00000042905, ENSDARG00000115649 400.47 3001.79 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
27. col1a2 ENSDARG00000020007 392.30 2940.55 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
28. rpl8 ENSDARG00000014867 384.13 2879.31 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
29. hspa8 ENSDARG00000068992, ENSDARG00000114726 375.95 2818.00 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
30. pfn1 ENSDARG00000088091 371.87 2787.41 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
31. ckma ENSDARG00000035327, ENSDARG00000114671 367.78 2756.76 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
32. zgc:66286 zgc:66286 351.44 2634.28
33. mt-cyb ENSDARG00000063924 339.18 2542.38 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
34. rpl26 ENSDARG00000102317 331.00 2481.07 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
35. col2a1a ENSDARG00000069093, ENSDARG00000111202 318.74 2389.17 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
36. actc1b ENSDARG00000099197 306.48 2297.27 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
37. rpl9 ENSDARG00000037350, ENSDARG00000112384 302.40 2266.69 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
38. eef2b ENSDARG00000100371, ENSDARG00000109247 298.31 2236.03 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
39. cyt1l ENSDARG00000036832 294.22 2205.38 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
40. rpl18a ENSDARG00000025073 290.14 2174.79 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
41. myl10 ENSDARG00000062592 286.05 2144.14 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
42. rps26l ENSDARG00000030408 281.97 2113.55 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
43. rpl23 ENSDARG00000053457 277.88 2082.90 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
44. btf3 ENSDARG00000035400, ENSDARG00000116462 273.79 2052.24 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
45. si:dkeyp-86f7.3 si:dkeyp-86f7.3 273.79 2052.24
46. tpm3 ENSDARG00000005162 273.79 2052.24 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
47. rps27a ENSDARG00000032725, ENSDARG00000114059 265.62 1991.00 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
48. tnnc2 ENSDARG00000070835, ENSDARG00000111155 265.62 1991.00 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
49. atp2a1 ENSDARG00000020574 261.53 1960.34 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
50. hmgn2 ENSDARG00000099572 261.53 1960.34 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
51. rps23 ENSDARG00000021838 261.53 1960.34 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
52. rpl19 ENSDARG00000013307 257.45 1929.76 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
53. id1 ENSDARG00000040764 253.36 1899.10 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
54. rps2 ENSDARG00000077291 253.36 1899.10 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
55. AL954137.2 ENSDARG00000114408 249.27 1868.45
56. and3 ENSDARG00000056873 245.19 1837.86 actinodin3 [Source:ZFIN;Acc:ZDB-GENE-040724-185]
57. pnrc2 ENSDARG00000053291, ENSDARG00000112537 241.10 1807.21 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
58. ywhabl ENSDARG00000040287 241.10 1807.21 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like [Source:ZFIN;Acc:ZDB-GENE-030131-448]
59. rpl11 ENSDARG00000043509 237.01 1776.55 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
60. acta1a ENSDARG00000036371 232.93 1745.97 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
61. myhz2 ENSDARG00000012944 224.76 1684.73 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
62. rps27.1 ENSDARG00000023298 220.67 1654.07 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
63. col11a1a ENSDARG00000026165, ENSDARG00000115341 216.58 1623.41 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
64. mt-co1 ENSDARG00000063905 216.58 1623.41 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
65. rpl27 ENSDARG00000015128 216.58 1623.41 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
66. rplp1 ENSDARG00000021864 216.58 1623.41 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
67. rps9 ENSDARG00000011405, ENSDARG00000113248 216.58 1623.41 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
68. rpl21 ENSDARG00000010516, ENSDARG00000110263 212.50 1592.83 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
69. and2 ENSDARG00000079302 208.41 1562.17 actinodin2 [Source:ZFIN;Acc:ZDB-GENE-041105-2]
70. cd81 cd81 204.32 1531.52
71. h3f3a 204.32 1531.52 H3 histone, family 3A, transcript variant X1
72. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 204.32 1531.52 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
73. sparc ENSDARG00000019353 204.32 1531.52 secreted protein, acidic, cysteine-rich (osteonectin) [Source:ZFIN;Acc:ZDB-GENE-030131-9]
74. gch2 ENSDARG00000099101 200.24 1500.93 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
75. hsp90ab1 ENSDARG00000029150 200.24 1500.93 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
76. rpl18 ENSDARG00000029533 200.24 1500.93 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
77. rpl28 ENSDARG00000005791 200.24 1500.93 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
78. si:ch1073-429i10.3 200.24 1500.93 si:ch1073-429i10.3, transcript variant X2
79. krt8 ENSDARG00000058358, ENSDARG00000109279 196.15 1470.28 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
80. rps20 ENSDARG00000036044 196.15 1470.28 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
81. rps4x ENSDARG00000014690 196.15 1470.28 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
82. ATP5B 192.06 1439.62 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
83. eif5a ENSDARG00000017235 192.06 1439.62 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
84. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 192.06 1439.62 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
85. bcam ENSDARG00000090190 187.98 1409.04 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
86. cfl1 ENSDARG00000021124 187.98 1409.04 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
87. smyhc1 ENSDARG00000099959, ENSDARG00000115916 187.98 1409.04 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
88. eef1g ENSDARG00000056119 183.89 1378.38 eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
89. fabp3 ENSDARG00000023290 183.89 1378.38 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
90. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 183.89 1378.38 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
91. mylz3 ENSDARG00000017441 183.89 1378.38 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
92. rps6 ENSDARG00000019778 183.89 1378.38 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
93. CABZ01074130.1 ENSDARG00000105274 179.80 1347.72
94. faua ENSDARG00000099022 179.80 1347.72 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
95. rps7 ENSDARG00000042566 179.80 1347.72 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
96. ttna ttna 175.72 1317.14
97. calm2a ENSDARG00000031427, ENSDARG00000111871 167.54 1255.82 calmodulin 2a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030804-3]
98. tpm2 ENSDARG00000104682 167.54 1255.82 tropomyosin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040625-114]
99. atp5a1 163.46 1225.24 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
100. calm3a_1 ENSDARG00000015050, ENSDARG00000100825 163.46 1225.24 calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA