Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s64.

Sample reads: 133,400. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 13962.08 104663.13
2. krt4 ENSDARG00000017624, ENSDARG00000115790 7532.48 56465.29 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2064.98 15479.59 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. tmsb4x ENSDARG00000077777 1994.58 14951.85 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. ckmb ENSDARG00000040565 1454.87 10906.06 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. mt-co2 ENSDARG00000063908 1349.28 10114.53 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. mt-nd4 ENSDARG00000063917 1009.02 7563.86 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
8. actb2 ENSDARG00000037870 962.09 7212.06 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
9. actb1 ENSDARG00000037746, ENSDARG00000113649 903.43 6772.33 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
10. mt-nd1 ENSDARG00000063895 856.50 6420.53 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
11. ckma ENSDARG00000035327, ENSDARG00000114671 797.83 5980.73 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
12. mt-atp6 ENSDARG00000063911 762.63 5716.86 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. myhz2 ENSDARG00000012944 750.90 5628.93 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
14. tnnc2 ENSDARG00000070835, ENSDARG00000111155 750.90 5628.93 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
15. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 739.17 5541.00 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
16. si:dkey-151g10.6 si:dkey-151g10.6 739.17 5541.00
17. mt-co3 ENSDARG00000063912 727.44 5453.07 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. mt-nd2 ENSDARG00000063899 727.44 5453.07 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
19. col1a1a ENSDARG00000012405, ENSDARG00000116113 703.97 5277.13 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
20. eef1a1l1 ENSDARG00000020850 692.24 5189.20 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
21. mylz3 ENSDARG00000017441 692.24 5189.20 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
22. cfl1l ENSDARG00000012972 668.77 5013.26 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
23. mt-cyb ENSDARG00000063924 657.04 4925.33 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
24. zgc:92533 zgc:92533 645.31 4837.40
25. zgc:112425 zgc:112425 551.44 4133.73
26. myl10 ENSDARG00000062592 539.71 4045.80 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
27. rpl10a ENSDARG00000042905, ENSDARG00000115649 539.71 4045.80 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
28. actc1b ENSDARG00000099197 516.24 3869.86 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
29. zgc:66286 zgc:66286 481.05 3606.07
30. atp2a1 ENSDARG00000020574 469.31 3518.06 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
31. pfn1 ENSDARG00000088091 469.31 3518.06 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
32. tnni2a.4 ENSDARG00000029069 457.58 3430.13 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
33. acta1b ENSDARG00000055618 445.85 3342.20 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
34. ppiaa ENSDARG00000009212 445.85 3342.20 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
35. rps27a ENSDARG00000032725, ENSDARG00000114059 445.85 3342.20 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
36. rpl23 ENSDARG00000053457 434.12 3254.27 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
37. rpl9 ENSDARG00000037350, ENSDARG00000112384 434.12 3254.27 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
38. hmga1a ENSDARG00000028335 422.38 3166.26 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
39. rps9 ENSDARG00000011405, ENSDARG00000113248 422.38 3166.26 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
40. hbae3 ENSDARG00000079305 410.65 3078.33 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
41. rps23 ENSDARG00000021838 398.92 2990.40 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
42. col1a1b ENSDARG00000035809 387.18 2902.39 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
43. icn ENSDARG00000009978 387.18 2902.39 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
44. faua ENSDARG00000099022 375.45 2814.46 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
45. mt-co1 ENSDARG00000063905 375.45 2814.46 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
46. pvalb2 ENSDARG00000002768, ENSDARG00000114085 375.45 2814.46 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
47. rpl19 ENSDARG00000013307 375.45 2814.46 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
48. rplp1 ENSDARG00000021864 363.72 2726.53 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
49. ptmab ENSDARG00000101766 351.99 2638.60 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
50. rps5 ENSDARG00000043453 351.99 2638.60 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
51. hspa8 ENSDARG00000068992, ENSDARG00000114726 340.25 2550.60 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
52. rpl36a ENSDARG00000058105, ENSDARG00000112656 340.25 2550.60 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
53. aldoab ENSDARG00000034470 328.52 2462.67 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
54. rpl11 ENSDARG00000043509 328.52 2462.67 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
55. rpl8 ENSDARG00000014867 328.52 2462.67 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
56. hmgn2 ENSDARG00000099572 316.79 2374.73 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
57. rpl18 ENSDARG00000029533 316.79 2374.73 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
58. rpl18a ENSDARG00000025073 316.79 2374.73 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
59. rpl35 ENSDARG00000018334 316.79 2374.73 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
60. hbbe3 ENSDARG00000038147, ENSDARG00000109344 305.05 2286.73 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
61. tpm3 ENSDARG00000005162 305.05 2286.73 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
62. rps15a ENSDARG00000010160 293.32 2198.80 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
63. rps26l ENSDARG00000030408 293.32 2198.80 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
64. si:ch211-226o13.2 293.32 2198.80 si:ch211-226o13.2
65. acta1a ENSDARG00000036371 281.59 2110.87 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
66. rpl27 ENSDARG00000015128 281.59 2110.87 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
67. rps12 ENSDARG00000036875, ENSDARG00000115157 281.59 2110.87 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
68. si:ch1073-429i10.3 281.59 2110.87 si:ch1073-429i10.3, transcript variant X2
69. rpl24 ENSDARG00000099104 269.86 2022.94 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
70. rps20 ENSDARG00000036044 269.86 2022.94 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
71. gch2 ENSDARG00000099101 258.12 1934.93 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
72. rps19 ENSDARG00000030602 258.12 1934.93 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
73. rps27.1 ENSDARG00000023298 258.12 1934.93 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
74. eif5a ENSDARG00000017235 246.39 1847.00 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
75. fkbp1aa ENSDARG00000022684 246.39 1847.00 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
76. rpl21 ENSDARG00000010516, ENSDARG00000110263 246.39 1847.00 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
77. rps4x ENSDARG00000014690 246.39 1847.00 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
78. fabp3 ENSDARG00000023290 234.66 1759.07 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
79. id1 ENSDARG00000040764 234.66 1759.07 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
80. rplp2l ENSDARG00000011201 234.66 1759.07 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
81. hbbe1.1 ENSDARG00000113599 222.92 1671.06 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
82. rpl15 ENSDARG00000009285 222.92 1671.06 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
83. zgc:165571 zgc:165571 222.92 1671.06
84. and3 ENSDARG00000056873 211.19 1583.13 actinodin3 [Source:ZFIN;Acc:ZDB-GENE-040724-185]
85. rpl26 ENSDARG00000102317 211.19 1583.13 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
86. rpl28 ENSDARG00000005791 211.19 1583.13 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
87. rpl30 ENSDARG00000035871, ENSDARG00000109253 211.19 1583.13 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
88. rpl6 ENSDARG00000058451 211.19 1583.13 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
89. rplp2 ENSDARG00000101406 211.19 1583.13 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
90. rps2 ENSDARG00000077291 211.19 1583.13 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
91. rps6 ENSDARG00000019778 211.19 1583.13 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
92. si:dkeyp-113d7.4 si:dkeyp-113d7.4 211.19 1583.13
93. sparc ENSDARG00000019353 211.19 1583.13 secreted protein, acidic, cysteine-rich (osteonectin) [Source:ZFIN;Acc:ZDB-GENE-030131-9]
94. tpm2 ENSDARG00000104682 211.19 1583.13 tropomyosin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040625-114]
95. apoc1l apoc1l 199.46 1495.20
96. eef1g ENSDARG00000056119 199.46 1495.20 eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
97. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 199.46 1495.20 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
98. icn2 ENSDARG00000055514 199.46 1495.20 ictacalcin 2 [Source:ZFIN;Acc:ZDB-GENE-070822-9]
99. pnrc2 ENSDARG00000053291, ENSDARG00000112537 199.46 1495.20 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
100. rps14 ENSDARG00000036629 199.46 1495.20 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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