Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s63.

Sample reads: 133,415. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 14884.49 111565.43
2. krt4 ENSDARG00000017624, ENSDARG00000115790 5794.39 43431.36 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2074.01 15545.57 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 1924.88 14427.77 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. mt-co2 ENSDARG00000063908 1704.64 12776.98 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. tmsb4x ENSDARG00000077777 1483.41 11118.77 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
7. ckma ENSDARG00000035327, ENSDARG00000114671 1414.28 10600.62 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
8. mt-atp6 ENSDARG00000063911 1261.20 9453.22 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
9. mt-co3 ENSDARG00000063912 1151.57 8631.50 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
10. actc1b ENSDARG00000099197 1016.27 7617.37 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
11. mt-nd2 ENSDARG00000063899 1003.43 7521.12 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
12. myhz2 ENSDARG00000012944 999.48 7491.52 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
13. si:dkey-151g10.6 si:dkey-151g10.6 966.88 7247.17
14. mylz3 ENSDARG00000017441 936.27 7017.73 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
15. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 910.59 6825.25 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
16. tnnc2 ENSDARG00000070835, ENSDARG00000111155 908.61 6810.41 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
17. actb2 ENSDARG00000037870 906.64 6795.64 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
18. mt-nd4 ENSDARG00000063917 886.89 6647.61 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
19. actb1 ENSDARG00000037746, ENSDARG00000113649 809.85 6070.16 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
20. mt-cyb ENSDARG00000063924 798.00 5981.34 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
21. eef1a1l1 ENSDARG00000020850 727.88 5455.76 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
22. atp2a1 ENSDARG00000020574 714.05 5352.10 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
23. pvalb2 ENSDARG00000002768, ENSDARG00000114085 707.14 5300.31 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
24. zgc:92533 zgc:92533 639.98 4796.92
25. acta1b ENSDARG00000055618 618.25 4634.04 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
26. tnni2a.4 ENSDARG00000029069 560.97 4204.70 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
27. rpl23 ENSDARG00000053457 559.00 4189.94 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
28. ppiaa ENSDARG00000009212 528.38 3960.43 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
29. zgc:66286 zgc:66286 526.40 3945.59
30. rpl10a ENSDARG00000042905, ENSDARG00000115649 516.53 3871.61 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
31. acta1a ENSDARG00000036371 504.68 3782.79 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
32. mt-nd1 ENSDARG00000063895 481.96 3612.49 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
33. myl10 ENSDARG00000062592 471.10 3531.09 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
34. col1a1a ENSDARG00000012405, ENSDARG00000116113 469.12 3516.25 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
35. myl1 ENSDARG00000014196 413.81 3101.68 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
36. si:ch211-226o13.2 406.90 3049.88 si:ch211-226o13.2
37. tnnt3a ENSDARG00000030270 406.90 3049.88 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
38. mt-co1 ENSDARG00000063905 401.96 3012.86 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
39. rpl9 ENSDARG00000037350, ENSDARG00000112384 385.17 2887.01 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
40. hbae3 ENSDARG00000079305 371.35 2783.42 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
41. hmga1a ENSDARG00000028335 369.37 2768.58 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
42. aldoab ENSDARG00000034470 355.54 2664.92 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
43. zgc:112425 zgc:112425 349.62 2620.55
44. cfl1l ENSDARG00000012972 343.69 2576.10 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
45. cyt1l ENSDARG00000036832 341.72 2561.33 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
46. rpl26 ENSDARG00000102317 339.74 2546.49 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
47. ptmab ENSDARG00000101766 334.80 2509.47 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
48. rplp1 ENSDARG00000021864 334.80 2509.47 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
49. rpl18a ENSDARG00000025073 324.93 2435.49 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
50. btf3 ENSDARG00000035400, ENSDARG00000116462 323.94 2428.06 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
51. pvalb1 ENSDARG00000037789 322.95 2420.64 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
52. rpl8 ENSDARG00000014867 319.00 2391.04 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
53. rps26l ENSDARG00000030408 310.11 2324.40 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
54. rps23 ENSDARG00000021838 309.13 2317.06 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
55. tpm3 ENSDARG00000005162 308.14 2309.64 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
56. rpl36a ENSDARG00000058105, ENSDARG00000112656 306.16 2294.80 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
57. hbbe3 ENSDARG00000038147, ENSDARG00000109344 305.18 2287.45 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
58. rps9 ENSDARG00000011405, ENSDARG00000113248 299.25 2243.00 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
59. rpl21 ENSDARG00000010516, ENSDARG00000110263 289.37 2168.95 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
60. hspa8 ENSDARG00000068992, ENSDARG00000114726 288.39 2161.60 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
61. rps27a ENSDARG00000032725, ENSDARG00000114059 287.40 2154.18 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
62. rpl18 ENSDARG00000029533 285.42 2139.34 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
63. rpl11 ENSDARG00000043509 284.44 2132.00 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
64. ATP5B 281.47 2109.73 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
65. pfn1 ENSDARG00000088091 277.52 2080.13 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
66. rps20 ENSDARG00000036044 276.53 2072.71 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
67. icn ENSDARG00000009978 275.55 2065.36 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
68. rps2 ENSDARG00000077291 274.56 2057.94 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
69. rpl19 ENSDARG00000013307 273.57 2050.52 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
70. fkbp1aa ENSDARG00000022684 269.62 2020.91 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
71. ttna ttna 268.63 2013.49
72. col1a1b ENSDARG00000035809 256.78 1924.67 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
73. myhz1.3 ENSDARG00000067997 250.86 1880.30 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
74. tnnt3b ENSDARG00000068457 248.88 1865.46 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
75. rps19 ENSDARG00000030602 245.92 1843.27 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
76. hbbe1.1 ENSDARG00000113599 241.97 1813.67 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
77. rps15a ENSDARG00000010160 241.97 1813.67 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
78. faua ENSDARG00000099022 237.03 1776.64 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
79. rplp2 ENSDARG00000101406 237.03 1776.64 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
80. smyhc1 ENSDARG00000099959, ENSDARG00000115916 235.05 1761.80 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
81. eif5a ENSDARG00000017235 233.08 1747.03 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
82. rps5 ENSDARG00000043453 232.09 1739.61 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
83. rps6 ENSDARG00000019778 228.14 1710.00 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
84. rpl27 ENSDARG00000015128 222.22 1665.63 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
85. rps15 ENSDARG00000070849, ENSDARG00000110979 219.25 1643.37 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
86. gapdh ENSDARG00000043457 217.28 1628.60 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
87. rpl7 ENSDARG00000007320 212.34 1591.58 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
88. rps12 ENSDARG00000036875, ENSDARG00000115157 211.35 1584.16 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
89. id1 ENSDARG00000040764 210.36 1576.74 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
90. rpl35 ENSDARG00000018334 209.38 1569.39 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
91. rpsa ENSDARG00000019181 209.38 1569.39 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
92. eef2b ENSDARG00000100371, ENSDARG00000109247 207.40 1554.55 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
93. rpl36 ENSDARG00000100588 205.43 1539.78 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
94. tnni2b.1 ENSDARG00000035958 205.43 1539.78 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
95. rplp2l ENSDARG00000011201 203.45 1524.94 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
96. rps14 ENSDARG00000036629 202.46 1517.52 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
97. rps27.1 ENSDARG00000023298 201.48 1510.18 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
98. rps4x ENSDARG00000014690 201.48 1510.18 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
99. hmgn2 ENSDARG00000099572 200.49 1502.76 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
100. mylpfb ENSDARG00000002589 199.50 1495.34 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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