Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s61.

Sample reads: 133,373. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 15088.89 113132.64
2. krt4 ENSDARG00000017624, ENSDARG00000115790 5375.55 40304.50 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2898.92 21735.36 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 2541.49 19055.44 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. mt-co2 ENSDARG00000063908 1713.83 12849.86 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. tmsb4x ENSDARG00000077777 1431.83 10735.50 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
7. mt-atp6 ENSDARG00000063911 1297.18 9725.92 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
8. myhz2 ENSDARG00000012944 1264.05 9477.52 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
9. ckma ENSDARG00000035327, ENSDARG00000114671 1220.34 9149.80 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
10. mylz3 ENSDARG00000017441 1174.51 8806.18 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
11. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1131.51 8483.77 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
12. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1092.03 8187.76 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
13. mt-co3 ENSDARG00000063912 1065.24 7986.90 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
14. mt-nd2 ENSDARG00000063899 1058.19 7934.04 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
15. mt-nd4 ENSDARG00000063917 975.71 7315.62 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
16. tnnc2 ENSDARG00000070835, ENSDARG00000111155 957.38 7178.19 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
17. actc1b ENSDARG00000099197 930.59 6977.33 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
18. hbae3 ENSDARG00000079305 823.43 6173.87 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
19. si:dkey-151g10.6 si:dkey-151g10.6 788.88 5914.82
20. mt-cyb ENSDARG00000063924 746.58 5597.67 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
21. atp2a1 ENSDARG00000020574 718.38 5386.23 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
22. actb2 ENSDARG00000037870 716.97 5375.66 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
23. tnni2a.4 ENSDARG00000029069 710.63 5328.12 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
24. actb1 ENSDARG00000037746, ENSDARG00000113649 709.92 5322.80 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
25. acta1b ENSDARG00000055618 681.02 5106.11 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
26. hbbe3 ENSDARG00000038147, ENSDARG00000109344 610.52 4577.52 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
27. eef1a1l1 ENSDARG00000020850 563.99 4228.65 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
28. zgc:92533 zgc:92533 562.58 4218.08
29. si:ch211-226o13.2 556.24 4170.55 si:ch211-226o13.2
30. mt-nd1 ENSDARG00000063895 552.71 4144.08 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
31. acta1a ENSDARG00000036371 502.66 3768.82 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
32. myl1 ENSDARG00000014196 470.93 3530.91 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
33. ppiaa ENSDARG00000009212 468.82 3515.09 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
34. hbbe1.1 ENSDARG00000113599 454.72 3409.37 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
35. zgc:66286 zgc:66286 453.31 3398.80
36. rpl10a ENSDARG00000042905, ENSDARG00000115649 444.85 3335.37 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
37. myhz1.3 ENSDARG00000067997 425.81 3192.61 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
38. hmga1a ENSDARG00000028335 413.83 3102.79 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
39. rpl23 ENSDARG00000053457 411.01 3081.65 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
40. mt-co1 ENSDARG00000063905 399.02 2991.75 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
41. tnnt3a ENSDARG00000030270 388.45 2912.50 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
42. zgc:112425 zgc:112425 387.04 2901.93
43. col1a1a ENSDARG00000012405, ENSDARG00000116113 386.33 2896.60 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
44. myl10 ENSDARG00000062592 371.53 2785.64 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
45. tnnt3b ENSDARG00000068457 353.90 2653.45 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
46. cfl1l ENSDARG00000012972 327.12 2452.66 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
47. aldoab ENSDARG00000034470 325.71 2442.09 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
48. ttna ttna 324.30 2431.52
49. hbae1_1 320.07 2399.80 hemoglobin, alpha embryonic 1
50. rpl8 ENSDARG00000014867 320.07 2399.80 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
51. hspa8 ENSDARG00000068992, ENSDARG00000114726 316.54 2373.34 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
52. mylpfb ENSDARG00000002589 315.84 2368.09 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
53. btf3 ENSDARG00000035400, ENSDARG00000116462 309.49 2320.48 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
54. col1a1b ENSDARG00000035809 301.74 2262.37 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
55. cyt1l ENSDARG00000036832 299.62 2246.47 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
56. ptmab ENSDARG00000101766 296.80 2225.33 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
57. rplp1 ENSDARG00000021864 296.10 2220.08 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
58. icn ENSDARG00000009978 293.98 2204.19 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
59. tpm3 ENSDARG00000005162 290.46 2177.79 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
60. pfn1 ENSDARG00000088091 283.41 2124.94 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
61. rpl9 ENSDARG00000037350, ENSDARG00000112384 282.00 2114.36 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
62. rpl26 ENSDARG00000102317 272.13 2040.36 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
63. rps23 ENSDARG00000021838 272.13 2040.36 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
64. gapdh ENSDARG00000043457 269.31 2019.22 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
65. hbbe1.1_1 ENSDARG00000113599 268.60 2013.89 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
66. rps27a ENSDARG00000032725, ENSDARG00000114059 267.90 2008.65 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
67. rps26l ENSDARG00000030408 260.14 1950.46 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
68. rpl36a ENSDARG00000058105, ENSDARG00000112656 257.32 1929.32 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
69. rps20 ENSDARG00000036044 248.16 1860.64 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
70. rpl18a ENSDARG00000025073 247.45 1855.32 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
71. rpl18 ENSDARG00000029533 243.93 1828.92 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
72. rpl19 ENSDARG00000013307 242.52 1818.35 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
73. pvalb4 ENSDARG00000024433 238.99 1791.89 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
74. rpl11 ENSDARG00000043509 237.58 1781.31 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
75. pvalb1 ENSDARG00000037789 236.88 1776.07 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
76. smyhc1 ENSDARG00000099959, ENSDARG00000115916 230.53 1728.46 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
77. fabp3 ENSDARG00000023290 228.42 1712.63 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
78. rpl21 ENSDARG00000010516, ENSDARG00000110263 223.48 1675.60 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
79. fkbp1aa ENSDARG00000022684 211.50 1585.77 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
80. rps5 ENSDARG00000043453 211.50 1585.77 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
81. rps27.1 ENSDARG00000023298 210.79 1580.45 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
82. ttnb ttnb 207.97 1559.31
83. rps12 ENSDARG00000036875, ENSDARG00000115157 206.56 1548.73 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
84. rpl27 ENSDARG00000015128 200.92 1506.45 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
85. rps15a ENSDARG00000010160 199.51 1495.88 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
86. id1 ENSDARG00000040764 198.81 1490.63 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
87. rpl7 ENSDARG00000007320 193.87 1453.59 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
88. rplp2 ENSDARG00000101406 193.87 1453.59 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
89. rpl35 ENSDARG00000018334 190.35 1427.20 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
90. rps15 ENSDARG00000070849, ENSDARG00000110979 190.35 1427.20 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
91. rps4x ENSDARG00000014690 188.23 1411.30 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
92. rps9 ENSDARG00000011405, ENSDARG00000113248 185.41 1390.16 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
93. rps6 ENSDARG00000019778 184.71 1384.91 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
94. atp5g3b 183.30 1374.34 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
95. rps2 ENSDARG00000077291 183.30 1374.34 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
96. col2a1a ENSDARG00000069093, ENSDARG00000111202 182.59 1369.01 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
97. eif5a ENSDARG00000017235 182.59 1369.01 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
98. hmgn2 ENSDARG00000099572 182.59 1369.01 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
99. faua ENSDARG00000099022 181.89 1363.76 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
100. tpm2 ENSDARG00000104682 181.18 1358.44 tropomyosin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040625-114]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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