Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Zebrafish_40hpf_whole_embryo1, section s60.

Sample reads: 133,403. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 9255.05 69376.52
2. krt4 ENSDARG00000017624, ENSDARG00000115790 7191.82 53910.40 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-nd4 ENSDARG00000063917 6287.93 47134.77 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
4. mt-nd2 ENSDARG00000063899 3733.46 27986.28 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
5. tpma ENSDARG00000033683 3536.96 26513.31 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
6. tmsb4x ENSDARG00000077777 3301.16 24745.73 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
7. actc1b ENSDARG00000099197 2299.02 17233.62 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
8. hbae3 ENSDARG00000079305 1355.84 10163.47 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
9. atp2a1 ENSDARG00000020574 1218.29 9132.39 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
10. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1198.64 8985.09 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
11. acta1b ENSDARG00000055618 1159.34 8690.50 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
12. ckmb ENSDARG00000040565 1100.39 8248.60 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
13. aldoab ENSDARG00000034470 1061.09 7954.01 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
14. pvalb2 ENSDARG00000002768, ENSDARG00000114085 943.19 7070.22 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
15. rpl26 ENSDARG00000102317 923.54 6922.92 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
16. mt-atp6 ENSDARG00000063911 805.64 6039.14 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
17. ckma ENSDARG00000035327, ENSDARG00000114671 785.99 5891.84 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
18. myhz2 ENSDARG00000012944 785.99 5891.84 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
19. mt-co2 ENSDARG00000063908 746.69 5597.24 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
20. acta1a ENSDARG00000036371 707.39 5302.65 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
21. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 687.74 5155.35 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
22. rps15a ENSDARG00000010160 668.09 5008.05 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
23. eef1a1l1 ENSDARG00000020850 648.44 4860.75 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
24. ldb3b ENSDARG00000099974 589.49 4418.86 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
25. mt-cyb ENSDARG00000063924 569.84 4271.56 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
26. cyt1l ENSDARG00000036832 550.19 4124.26 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
27. atp5g1 510.89 3829.67 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
28. myhz1.3 ENSDARG00000067997 510.89 3829.67 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
29. actb2 ENSDARG00000037870 491.24 3682.37 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
30. ppiaa ENSDARG00000009212 491.24 3682.37 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
31. tnni2a.4 ENSDARG00000029069 471.59 3535.07 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
32. mt-co3 ENSDARG00000063912 451.95 3387.85 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
33. mt-nd1 ENSDARG00000063895 451.95 3387.85 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
34. myl10 ENSDARG00000062592 451.95 3387.85 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
35. mylz3 ENSDARG00000017441 451.95 3387.85 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
36. mylpfb ENSDARG00000002589 412.65 3093.25 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
37. rpl8 ENSDARG00000014867 393.00 2945.96 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
38. si:dkeyp-113d7.4 si:dkeyp-113d7.4 393.00 2945.96
39. actb1 ENSDARG00000037746, ENSDARG00000113649 353.70 2651.36 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
40. col1a1a ENSDARG00000012405, ENSDARG00000116113 353.70 2651.36 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
41. cox4i1 ENSDARG00000032970 353.70 2651.36 cytochrome c oxidase subunit 4I1 [Source:ZFIN;Acc:ZDB-GENE-030131-5175]
42. mt-co1 ENSDARG00000063905 353.70 2651.36 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
43. rpl21 ENSDARG00000010516, ENSDARG00000110263 353.70 2651.36 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
44. gapdh ENSDARG00000043457 334.05 2504.06 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
45. hbbe1.1 ENSDARG00000113599 334.05 2504.06 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
46. pvalb1 ENSDARG00000037789 334.05 2504.06 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
47. si:dkey-151g10.6 si:dkey-151g10.6 334.05 2504.06
48. col1a1b ENSDARG00000035809 314.40 2356.76 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
49. ptmab ENSDARG00000101766 314.40 2356.76 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
50. zgc:92533 zgc:92533 314.40 2356.76
51. apoa2 ENSDARG00000015866 294.75 2209.47 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
52. eef2b ENSDARG00000100371, ENSDARG00000109247 294.75 2209.47 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
53. hbbe3 ENSDARG00000038147, ENSDARG00000109344 294.75 2209.47 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
54. rpl10a ENSDARG00000042905, ENSDARG00000115649 294.75 2209.47 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
55. rps26l ENSDARG00000030408 294.75 2209.47 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
56. zgc:113413 zgc:113413 294.75 2209.47
57. ATP5B 275.10 2062.17 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
58. gch2 ENSDARG00000099101 275.10 2062.17 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
59. hmga1a ENSDARG00000028335 275.10 2062.17 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
60. rpl34 ENSDARG00000029500 275.10 2062.17 ribosomal protein L34 [Source:ZFIN;Acc:ZDB-GENE-040426-1033]
61. zgc:66286 zgc:66286 275.10 2062.17
62. BX511252.1 BX511252.1 255.45 1914.87
63. anxa1a ENSDARG00000026726 255.45 1914.87 annexin A1a [Source:ZFIN;Acc:ZDB-GENE-030131-6664]
64. col1a2 ENSDARG00000020007 255.45 1914.87 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
65. hbae1 255.45 1914.87 hemoglobin, alpha embryonic 1
66. ndufb9 ENSDARG00000041314, ENSDARG00000112557 255.45 1914.87 NADH:ubiquinone oxidoreductase subunit B9 [Source:ZFIN;Acc:ZDB-GENE-030131-8364]
67. rpl18a ENSDARG00000025073 255.45 1914.87 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
68. rpl19 ENSDARG00000013307 255.45 1914.87 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
69. rpl9 ENSDARG00000037350, ENSDARG00000112384 255.45 1914.87 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
70. si:ch211-226o13.2 255.45 1914.87 si:ch211-226o13.2
71. tnnt3a ENSDARG00000030270 255.45 1914.87 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
72. rpl15 ENSDARG00000009285 235.80 1767.57 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
73. rpl5b ENSDARG00000015862, ENSDARG00000109661 235.80 1767.57 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
74. pgam2 ENSDARG00000057571 216.15 1620.28 phosphoglycerate mutase 2 (muscle) [Source:ZFIN;Acc:ZDB-GENE-040116-6]
75. rpl30 ENSDARG00000035871, ENSDARG00000109253 216.15 1620.28 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
76. rplp1 ENSDARG00000021864 216.15 1620.28 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
77. zgc:112425 zgc:112425 216.15 1620.28
78. atp5e 196.50 1472.98 ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit
79. fabp3 ENSDARG00000023290 196.50 1472.98 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
80. pvalb4 ENSDARG00000024433 196.50 1472.98 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
81. rpl17 ENSDARG00000057556 196.50 1472.98 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
82. rpl36a ENSDARG00000058105, ENSDARG00000112656 196.50 1472.98 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
83. rps12 ENSDARG00000036875, ENSDARG00000115157 196.50 1472.98 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
84. rps27.1 ENSDARG00000023298 196.50 1472.98 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
85. rps6 ENSDARG00000019778 196.50 1472.98 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
86. si:dkeyp-86f7.3 si:dkeyp-86f7.3 196.50 1472.98
87. ttna ttna 196.50 1472.98
88. AL954137.2 ENSDARG00000114408 176.85 1325.68
89. btf3 ENSDARG00000035400, ENSDARG00000116462 176.85 1325.68 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
90. cfl1l ENSDARG00000012972 176.85 1325.68 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
91. eif5a ENSDARG00000017235 176.85 1325.68 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
92. faua ENSDARG00000099022 176.85 1325.68 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
93. hsp90ab1 ENSDARG00000029150 176.85 1325.68 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
94. lama2 ENSDARG00000099390 176.85 1325.68 laminin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-060119-1]
95. myl1 ENSDARG00000014196 176.85 1325.68 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
96. rpl18 ENSDARG00000029533 176.85 1325.68 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
97. rps4x ENSDARG00000014690 176.85 1325.68 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
98. tmem38a ENSDARG00000024047 176.85 1325.68 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
99. tmod4 ENSDARG00000020890 176.85 1325.68 tropomodulin 4 (muscle) [Source:ZFIN;Acc:ZDB-GENE-991019-9]
100. tnw 176.85 1325.68 tenascin W, transcript variant X2
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA