Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s6.

Sample reads: 133,396. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 17805.76 133480.16
2. ptmab ENSDARG00000101766 1788.78 13409.52 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
3. zgc:112425 zgc:112425 1450.71 10875.19
4. mt-co2 ENSDARG00000063908 1312.57 9839.63 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. tmsb4x ENSDARG00000077777 1209.74 9068.77 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
6. ppiaa ENSDARG00000009212 1142.21 8562.53 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
7. hmga1a ENSDARG00000028335 1031.87 7735.37 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
8. hmgn2 ENSDARG00000099572 1030.55 7725.48 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
9. si:dkey-151g10.6 si:dkey-151g10.6 1018.19 7632.82
10. eef1a1l1 ENSDARG00000020850 842.53 6315.99 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
11. AL954137.2 ENSDARG00000114408 672.61 5042.19
12. h3f3a 595.82 4466.54 H3 histone, family 3A, transcript variant X1
13. actb2 ENSDARG00000037870 581.70 4360.69 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
14. mt-co3 ENSDARG00000063912 556.54 4172.08 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
15. rpl23 ENSDARG00000053457 553.45 4148.92 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
16. si:dkeyp-86f7.3 si:dkeyp-86f7.3 503.14 3771.77
17. cirbp cirbp 502.25 3765.10
18. mt-atp6 ENSDARG00000063911 502.25 3765.10 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
19. rpl10a ENSDARG00000042905, ENSDARG00000115649 496.96 3725.44 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
20. hnrnpab hnrnpab 466.51 3497.17
21. khdrbs1a ENSDARG00000052856 426.78 3199.34 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
22. hspa8 ENSDARG00000068992, ENSDARG00000114726 420.16 3149.71 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
23. eef2b ENSDARG00000100371, ENSDARG00000109247 417.52 3129.92 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
24. hsp90ab1 ENSDARG00000029150 408.69 3063.73 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
25. mt-nd4 ENSDARG00000063917 408.25 3060.43 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
26. rps20 ENSDARG00000036044 399.42 2994.24 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
27. ptmaa ENSDARG00000021113, ENSDARG00000110479 389.27 2918.15 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
28. pcna ENSDARG00000054155 384.41 2881.71 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
29. mt-nd2 ENSDARG00000063899 379.12 2842.06 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
30. cfl1 ENSDARG00000021124 377.79 2832.09 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
31. krt4 ENSDARG00000017624, ENSDARG00000115790 376.91 2825.49 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
32. rpl36a ENSDARG00000058105, ENSDARG00000112656 357.93 2683.21 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
33. rps15 ENSDARG00000070849, ENSDARG00000110979 357.05 2676.61 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
34. hnrnpa0a ENSDARG00000089302 347.34 2603.82 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
35. rps23 ENSDARG00000021838 345.13 2587.25 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
36. rpl9 ENSDARG00000037350, ENSDARG00000112384 343.81 2577.36 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
37. rplp1 ENSDARG00000021864 342.49 2567.46 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
38. mt-cyb ENSDARG00000063924 335.42 2514.46 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
39. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 333.66 2501.27 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
40. rpl11 ENSDARG00000043509 331.45 2484.70 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
41. actb1 ENSDARG00000037746, ENSDARG00000113649 318.21 2385.45 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
42. h3f3d ENSDARG00000045248 318.21 2385.45 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
43. h2afvb ENSDARG00000116491 313.36 2349.09 H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
44. id1 ENSDARG00000040764 312.47 2342.42 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
45. btf3 ENSDARG00000035400, ENSDARG00000116462 310.71 2329.23 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
46. marcksb ENSDARG00000008803 309.83 2322.63 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
47. rpl8 ENSDARG00000014867 305.85 2292.79 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
48. fkbp1aa ENSDARG00000022684 303.21 2273.00 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
49. si:ch1073-429i10.3 299.68 2246.54 si:ch1073-429i10.3, transcript variant X2
50. fabp3 ENSDARG00000023290 292.17 2190.24 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
51. rpl27 ENSDARG00000015128 290.85 2180.35 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
52. rps9 ENSDARG00000011405, ENSDARG00000113248 289.52 2170.38 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
53. rps27.1 ENSDARG00000023298 286.88 2150.58 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
54. rpl36 ENSDARG00000100588 285.55 2140.61 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
55. rpl21 ENSDARG00000010516, ENSDARG00000110263 272.75 2044.66 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
56. rps2 ENSDARG00000077291 271.43 2034.76 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
57. pnrc2 ENSDARG00000053291, ENSDARG00000112537 269.66 2021.50 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
58. stmn1b ENSDARG00000033655 269.22 2018.20 stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
59. faua ENSDARG00000099022 262.60 1968.57 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
60. rps15a ENSDARG00000010160 260.84 1955.38 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
61. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 258.19 1935.51 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
62. rps14 ENSDARG00000036629 253.33 1899.08 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
63. TUBA1A ENSDARG00000001889 252.89 1895.78 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
64. marcksl1b ENSDARG00000035715 251.57 1885.88 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
65. rps27a ENSDARG00000032725, ENSDARG00000114059 246.71 1849.45 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
66. rpl18a ENSDARG00000025073 242.30 1816.39 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
67. rpl26 ENSDARG00000102317 238.77 1789.93 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
68. rps12 ENSDARG00000036875, ENSDARG00000115157 237.89 1783.33 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
69. mt-nd1 ENSDARG00000063895 236.12 1770.06 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
70. rpl18 ENSDARG00000029533 234.36 1756.87 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
71. nucks1a ENSDARG00000078473 233.03 1746.90 nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
72. rps19 ENSDARG00000030602 230.83 1730.41 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
73. zgc:123194 zgc:123194 227.29 1703.87
74. eef1g ENSDARG00000056119 224.20 1680.71 eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
75. rps24 ENSDARG00000039347 224.20 1680.71 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
76. rpsa ENSDARG00000019181 223.76 1677.41 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
77. rpl7 ENSDARG00000007320 222.88 1670.81 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
78. rpl35 ENSDARG00000018334 220.67 1654.24 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
79. rpl19 ENSDARG00000013307 218.47 1637.75 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
80. marcksl1a ENSDARG00000039034 217.14 1627.78 MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
81. eif5a ENSDARG00000017235 209.20 1568.26 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
82. rps6 ENSDARG00000019778 205.23 1538.50 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
83. rpl15 ENSDARG00000009285 202.14 1515.33 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
84. fabp7a ENSDARG00000007697 201.70 1512.04 fatty acid binding protein 7, brain, a [Source:ZFIN;Acc:ZDB-GENE-000627-1]
85. rpl5b ENSDARG00000015862, ENSDARG00000109661 197.28 1478.90 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
86. hmgb1a ENSDARG00000099175, ENSDARG00000114353 192.43 1442.54 high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]
87. rplp2 ENSDARG00000101406 192.43 1442.54 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
88. rps5 ENSDARG00000043453 189.78 1422.68 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
89. mt-co1 ENSDARG00000063905 188.90 1416.08 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
90. rpl28 ENSDARG00000005791 188.01 1409.41 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
91. ywhabl ENSDARG00000040287 187.13 1402.81 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like [Source:ZFIN;Acc:ZDB-GENE-030131-448]
92. rpl6 ENSDARG00000058451 186.25 1396.22 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
93. ran ENSDARG00000057026 184.48 1382.95 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
94. ubc ENSDARG00000102632 183.16 1373.05 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
95. rps26l ENSDARG00000030408 181.84 1363.16 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
96. seta ENSDARG00000031495 181.39 1359.78 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
97. rplp0 ENSDARG00000051783 180.95 1356.48 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
98. rpl39 ENSDARG00000036316, ENSDARG00000117167 179.63 1346.59 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
99. rps7 ENSDARG00000042566 176.98 1326.72 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
100. rpl30 ENSDARG00000035871, ENSDARG00000109253 174.77 1310.16 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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