Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s59.

Sample reads: 133,414. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. krt4 ENSDARG00000017624, ENSDARG00000115790 10384.98 77840.40 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
2. tpma ENSDARG00000033683 6510.90 48802.31 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. tmsb4x ENSDARG00000077777 3207.64 24042.80 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. AC024175.4 AC024175.4 2306.49 17288.25
5. actc1b ENSDARG00000099197 1889.23 14160.68 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
6. mt-nd4 ENSDARG00000063917 1816.79 13617.71 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
7. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1700.89 12748.98 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
8. atp2a1 ENSDARG00000020574 1570.50 11771.65 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
9. aldoab ENSDARG00000034470 1414.03 10598.83 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
10. myhz2 ENSDARG00000012944 1332.89 9990.65 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
11. acta1b ENSDARG00000055618 1309.71 9816.90 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
12. mt-nd2 ENSDARG00000063899 1193.81 8948.18 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. mt-co2 ENSDARG00000063908 1098.19 8231.46 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
14. ckmb ENSDARG00000040565 1040.24 7797.10 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
15. tnnc2 ENSDARG00000070835, ENSDARG00000111155 950.41 7123.78 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
16. tnni2a.4 ENSDARG00000029069 814.22 6102.97 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
17. ckma ENSDARG00000035327, ENSDARG00000114671 782.35 5864.09 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
18. actb2 ENSDARG00000037870 709.91 5321.12 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
19. myl10 ENSDARG00000062592 683.83 5125.63 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
20. mt-nd1 ENSDARG00000063895 660.65 4951.89 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
21. pvalb4 ENSDARG00000024433 637.47 4778.14 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
22. myhz1.3 ENSDARG00000067997 625.88 4691.27 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
23. eef1a1l1 ENSDARG00000020850 622.98 4669.53 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
24. mt-co3 ENSDARG00000063912 596.90 4474.05 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
25. hbbe3 ENSDARG00000038147, ENSDARG00000109344 550.54 4126.56 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
26. mt-atp6 ENSDARG00000063911 547.65 4104.90 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
27. col1a1b ENSDARG00000035809 530.26 3974.55 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
28. pvalb1 ENSDARG00000037789 527.36 3952.82 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
29. tnnt3b ENSDARG00000068457 518.67 3887.68 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
30. cfl1l ENSDARG00000012972 507.08 3800.81 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
31. hbae3 ENSDARG00000079305 469.41 3518.45 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
32. si:dkey-151g10.6 si:dkey-151g10.6 469.41 3518.45
33. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 466.51 3496.72 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
34. si:ch211-226o13.2 440.43 3301.23 si:ch211-226o13.2
35. acta1a ENSDARG00000036371 434.64 3257.83 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
36. mt-cyb ENSDARG00000063924 434.64 3257.83 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
37. rpl26 ENSDARG00000102317 414.36 3105.83 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
38. col1a1a ENSDARG00000012405, ENSDARG00000116113 411.46 3084.09 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
39. gapdh ENSDARG00000043457 405.66 3040.62 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
40. zgc:112425 zgc:112425 396.97 2975.48
41. ppiaa ENSDARG00000009212 385.38 2888.61 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
42. zgc:66286 zgc:66286 373.79 2801.73
43. cyt1l ENSDARG00000036832 370.89 2780.00 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
44. hbbe1.1 ENSDARG00000113599 362.20 2714.86 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
45. ttna ttna 359.30 2693.13
46. ldb3b ENSDARG00000099974 336.12 2519.38 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
47. smyhc1 ENSDARG00000099959, ENSDARG00000115916 327.43 2454.24 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
48. mylpfb ENSDARG00000002589 315.84 2367.37 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
49. si:dkeyp-86f7.3 si:dkeyp-86f7.3 315.84 2367.37
50. tnw 307.15 2302.24 tenascin W, transcript variant X2
51. gch2 ENSDARG00000099101 289.76 2171.89 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
52. rps27a ENSDARG00000032725, ENSDARG00000114059 286.86 2150.15 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
53. cox4i1 ENSDARG00000032970 278.17 2085.02 cytochrome c oxidase subunit 4I1 [Source:ZFIN;Acc:ZDB-GENE-030131-5175]
54. rpl18a ENSDARG00000025073 278.17 2085.02 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
55. si:dkeyp-113d7.4 si:dkeyp-113d7.4 278.17 2085.02
56. actb1 ENSDARG00000037746, ENSDARG00000113649 275.27 2063.28 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
57. mylz3 ENSDARG00000017441 275.27 2063.28 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
58. rpl9 ENSDARG00000037350, ENSDARG00000112384 272.37 2041.54 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
59. rps26l ENSDARG00000030408 269.48 2019.88 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
60. ttnb ttnb 263.68 1976.41
61. ATP5B 260.78 1954.67 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
62. tnnt3a ENSDARG00000030270 257.89 1933.01 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
63. hmgn2 ENSDARG00000099572 246.30 1846.14 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
64. col1a2 ENSDARG00000020007 240.50 1802.66 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
65. rpl8 ENSDARG00000014867 240.50 1802.66 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
66. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 237.60 1780.93 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
67. icn ENSDARG00000009978 234.71 1759.26 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
68. rpl36 ENSDARG00000100588 234.71 1759.26 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
69. col9a1 col9a1 223.11 1672.32
70. eef2b ENSDARG00000100371, ENSDARG00000109247 217.32 1628.92 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
71. si:ch1073-429i10.3 217.32 1628.92 si:ch1073-429i10.3, transcript variant X2
72. hmga1a ENSDARG00000028335 214.42 1607.18 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
73. atp5g1 211.52 1585.44 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
74. casq2 ENSDARG00000008982 211.52 1585.44 calsequestrin 2 [Source:ZFIN;Acc:ZDB-GENE-010724-12]
75. zgc:113413 zgc:113413 205.73 1542.04
76. zgc:86709 ENSDARG00000110511, ENSDARG00000111417 205.73 1542.04 zgc:86709 [Source:ZFIN;Acc:ZDB-GENE-040625-35]
77. h3f3a 202.83 1520.31 H3 histone, family 3A, transcript variant X1
78. rpl27 ENSDARG00000015128 202.83 1520.31 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
79. rps9 ENSDARG00000011405, ENSDARG00000113248 199.93 1498.57 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
80. myl1 ENSDARG00000014196 197.04 1476.91 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
81. rps15a ENSDARG00000010160 197.04 1476.91 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
82. tmem38a ENSDARG00000024047 197.04 1476.91 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
83. actn3a ENSDARG00000013755, ENSDARG00000111128 194.14 1455.17 actinin alpha 3a [Source:ZFIN;Acc:ZDB-GENE-000329-9]
84. atp5g3b 191.24 1433.44 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
85. rps6 ENSDARG00000019778 191.24 1433.44 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
86. h3f3d ENSDARG00000045248 188.34 1411.70 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
87. tpm3 ENSDARG00000005162 182.55 1368.30 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
88. actn3b ENSDARG00000001431 179.65 1346.56 actinin alpha 3b [Source:ZFIN;Acc:ZDB-GENE-030131-2040]
89. fabp3 ENSDARG00000023290 179.65 1346.56 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
90. rpl10a ENSDARG00000042905, ENSDARG00000115649 179.65 1346.56 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
91. rplp1 ENSDARG00000021864 176.75 1324.83 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
92. icn2 ENSDARG00000055514 168.06 1259.69 ictacalcin 2 [Source:ZFIN;Acc:ZDB-GENE-070822-9]
93. col2a1a ENSDARG00000069093, ENSDARG00000111202 165.16 1237.95 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
94. rpl14 ENSDARG00000103433 162.27 1216.29 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
95. atp5a1 156.47 1172.82 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
96. pgam2 ENSDARG00000057571 156.47 1172.82 phosphoglycerate mutase 2 (muscle) [Source:ZFIN;Acc:ZDB-GENE-040116-6]
97. rpl19 ENSDARG00000013307 156.47 1172.82 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
98. rpl39 ENSDARG00000036316, ENSDARG00000117167 156.47 1172.82 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
99. ptmab ENSDARG00000101766 153.57 1151.08 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
100. rps18 ENSDARG00000100392 150.67 1129.34 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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