Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s58.

Sample reads: 133,399. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 13199.61 98948.35
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4539.68 34030.84 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2294.51 17200.36 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. actc1b ENSDARG00000099197 2072.46 15535.80 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
5. ckmb ENSDARG00000040565 1776.40 13316.44 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. mt-nd4 ENSDARG00000063917 1751.72 13131.43 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
7. mt-atp6 ENSDARG00000063911 1480.33 11097.01 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
8. mt-co2 ENSDARG00000063908 1455.66 10912.08 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. mt-nd2 ENSDARG00000063899 1406.31 10542.13 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
10. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1381.64 10357.20 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
11. atp2a1 ENSDARG00000020574 1134.92 8507.71 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
12. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1036.23 7767.90 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
13. ckma ENSDARG00000035327, ENSDARG00000114671 986.89 7398.03 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
14. mt-co3 ENSDARG00000063912 986.89 7398.03 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
15. eef1a1l1 ENSDARG00000020850 912.87 6843.16 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
16. tmsb4x ENSDARG00000077777 863.53 6473.29 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
17. acta1b ENSDARG00000055618 838.85 6288.28 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
18. myhz1.3 ENSDARG00000067997 814.18 6103.34 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
19. mt-nd1 ENSDARG00000063895 740.16 5548.47 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
20. tnni2a.4 ENSDARG00000029069 740.16 5548.47 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
21. myhz2 ENSDARG00000012944 715.49 5363.53 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
22. actb2 ENSDARG00000037870 666.15 4993.67 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
23. actb1 ENSDARG00000037746, ENSDARG00000113649 616.80 4623.72 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
24. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 616.80 4623.72 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
25. pvalb1 ENSDARG00000037789 592.13 4438.79 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
26. si:ch211-226o13.2 592.13 4438.79 si:ch211-226o13.2
27. apoc1l apoc1l 542.79 4068.92
28. hmgn2 ENSDARG00000099572 542.79 4068.92 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
29. mylz3 ENSDARG00000017441 518.12 3883.99 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
30. ttna ttna 468.77 3514.04
31. col1a1a ENSDARG00000012405, ENSDARG00000116113 444.10 3329.11 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
32. rpl23 ENSDARG00000053457 444.10 3329.11 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
33. acta1a ENSDARG00000036371 419.43 3144.18 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
34. ppiaa ENSDARG00000009212 419.43 3144.18 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
35. rps2 ENSDARG00000077291 419.43 3144.18 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
36. tnnt3a ENSDARG00000030270 419.43 3144.18 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
37. eef2b ENSDARG00000100371, ENSDARG00000109247 394.75 2959.17 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
38. mt-cyb ENSDARG00000063924 394.75 2959.17 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
39. hbbe1.1 ENSDARG00000113599 370.08 2774.23 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
40. si:dkey-151g10.6 si:dkey-151g10.6 370.08 2774.23
41. zgc:92533 zgc:92533 370.08 2774.23
42. cfl1l ENSDARG00000012972 345.41 2589.30 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
43. cyt1l ENSDARG00000036832 345.41 2589.30 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
44. hmga1a ENSDARG00000028335 345.41 2589.30 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
45. myl10 ENSDARG00000062592 345.41 2589.30 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
46. pvalb4 ENSDARG00000024433 345.41 2589.30 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
47. rpl10a ENSDARG00000042905, ENSDARG00000115649 345.41 2589.30 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
48. si:dkeyp-113d7.4 si:dkeyp-113d7.4 345.41 2589.30
49. tpm3 ENSDARG00000005162 345.41 2589.30 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
50. zgc:161979_1 zgc:161979_1 345.41 2589.30
51. id1 ENSDARG00000040764 320.74 2404.37 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
52. rpl36a ENSDARG00000058105, ENSDARG00000112656 320.74 2404.37 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
53. rplp1 ENSDARG00000021864 320.74 2404.37 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
54. actn3a ENSDARG00000013755, ENSDARG00000111128 296.07 2219.43 actinin alpha 3a [Source:ZFIN;Acc:ZDB-GENE-000329-9]
55. rpl8 ENSDARG00000014867 296.07 2219.43 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
56. rps15 ENSDARG00000070849, ENSDARG00000110979 296.07 2219.43 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
57. rps5 ENSDARG00000043453 296.07 2219.43 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
58. bhmt ENSDARG00000013430 271.39 2034.42 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
59. col1a1b ENSDARG00000035809 271.39 2034.42 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
60. fabp3 ENSDARG00000023290 271.39 2034.42 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
61. rps27a ENSDARG00000032725, ENSDARG00000114059 271.39 2034.42 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
62. rps4x ENSDARG00000014690 271.39 2034.42 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
63. tnnt3b ENSDARG00000068457 271.39 2034.42 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
64. BX511252.1 BX511252.1 246.72 1849.49
65. apoa1b ENSDARG00000101324 246.72 1849.49 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
66. apobb apobb 246.72 1849.49
67. hbbe3 ENSDARG00000038147, ENSDARG00000109344 246.72 1849.49 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
68. pfn1 ENSDARG00000088091 246.72 1849.49 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
69. rpl17 ENSDARG00000057556 246.72 1849.49 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
70. rpl19 ENSDARG00000013307 246.72 1849.49 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
71. smyhc1 ENSDARG00000099959, ENSDARG00000115916 246.72 1849.49 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
72. ATP5B 222.05 1664.56 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
73. apoeb ENSDARG00000040295 222.05 1664.56 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
74. btf3 ENSDARG00000035400, ENSDARG00000116462 222.05 1664.56 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
75. hsp90ab1 ENSDARG00000029150 222.05 1664.56 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
76. hspa8 ENSDARG00000068992, ENSDARG00000114726 222.05 1664.56 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
77. rpl18a ENSDARG00000025073 222.05 1664.56 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
78. rpl7 ENSDARG00000007320 222.05 1664.56 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
79. rpl9 ENSDARG00000037350, ENSDARG00000112384 222.05 1664.56 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
80. rplp2 ENSDARG00000101406 222.05 1664.56 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
81. rps18 ENSDARG00000100392 222.05 1664.56 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
82. rps26l ENSDARG00000030408 222.05 1664.56 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
83. rps27.1 ENSDARG00000023298 222.05 1664.56 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
84. uba52 ENSDARG00000041435 222.05 1664.56 ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:ZFIN;Acc:ZDB-GENE-051023-7]
85. aldoab ENSDARG00000034470 197.38 1479.62 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
86. col18a1 col18a1 197.38 1479.62
87. hsp90aa1.1 ENSDARG00000010478 197.38 1479.62 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
88. mt-co1 ENSDARG00000063905 197.38 1479.62 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
89. nme2b.2 ENSDARG00000099420 197.38 1479.62 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
90. pcna ENSDARG00000054155 197.38 1479.62 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
91. rpl11 ENSDARG00000043509 197.38 1479.62 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
92. rpl5b ENSDARG00000015862, ENSDARG00000109661 197.38 1479.62 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
93. rpl6 ENSDARG00000058451 197.38 1479.62 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
94. rps9 ENSDARG00000011405, ENSDARG00000113248 197.38 1479.62 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
95. FP067396.1 FP067396.1 172.71 1294.69
96. TUBA1A ENSDARG00000001889 172.71 1294.69 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
97. ak1 ENSDARG00000001950 172.71 1294.69 adenylate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040822-37]
98. apoa2 ENSDARG00000015866 172.71 1294.69 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
99. bcam ENSDARG00000090190 172.71 1294.69 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
100. hbae1_1 172.71 1294.69 hemoglobin, alpha embryonic 1
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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