Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s57.

Sample reads: 133,420. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 26323.81 197300.29
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4081.55 30591.73 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2811.92 21075.70 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 1829.36 13711.28 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. mt-co2 ENSDARG00000063908 1724.09 12922.27 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. mt-atp6 ENSDARG00000063911 1320.82 9899.71 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
7. mt-co3 ENSDARG00000063912 1214.97 9106.35 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
8. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1139.04 8537.25 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
9. mylz3 ENSDARG00000017441 1114.87 8356.09 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
10. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1091.29 8179.36 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
11. ckma ENSDARG00000035327, ENSDARG00000114671 1051.59 7881.80 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
12. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1006.15 7541.22 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
13. tmsb4x ENSDARG00000077777 992.92 7442.06 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
14. mt-nd4 ENSDARG00000063917 985.44 7386.00 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
15. mt-nd2 ENSDARG00000063899 929.64 6967.77 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
16. myhz1.3 ENSDARG00000067997 819.76 6144.20 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
17. myhz2 ENSDARG00000012944 812.28 6088.14 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
18. acta1b ENSDARG00000055618 789.27 5915.68 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
19. si:dkey-151g10.6 si:dkey-151g10.6 789.27 5915.68
20. actb2 ENSDARG00000037870 745.55 5587.99 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
21. mt-cyb ENSDARG00000063924 741.52 5557.79 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
22. tnni2a.4 ENSDARG00000029069 659.84 4945.58 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
23. actc1b ENSDARG00000099197 639.70 4794.63 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
24. atp2a1 ENSDARG00000020574 623.59 4673.89 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
25. mt-nd1 ENSDARG00000063895 606.34 4544.59 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
26. actb1 ENSDARG00000037746, ENSDARG00000113649 578.15 4333.31 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
27. tnnt3a ENSDARG00000030270 552.26 4139.26 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
28. eef1a1l1 ENSDARG00000020850 525.80 3940.94 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
29. acta1a ENSDARG00000036371 514.87 3859.02 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
30. rpl23 ENSDARG00000053457 486.68 3647.73 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
31. ppiaa ENSDARG00000009212 457.92 3432.17 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
32. rpl10a ENSDARG00000042905, ENSDARG00000115649 444.11 3328.66 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
33. pvalb1 ENSDARG00000037789 430.88 3229.50 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
34. si:ch211-226o13.2 411.89 3087.17 si:ch211-226o13.2
35. zgc:66286 zgc:66286 409.59 3069.93
36. myl10 ENSDARG00000062592 386.58 2897.47 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
37. myl1 ENSDARG00000014196 362.42 2716.38 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
38. zgc:92533 zgc:92533 361.85 2712.11
39. mt-co1 ENSDARG00000063905 360.12 2699.14 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
40. aldoab ENSDARG00000034470 347.46 2604.26 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
41. tnnt3b ENSDARG00000068457 342.86 2569.78 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
42. rpl36a ENSDARG00000058105, ENSDARG00000112656 327.33 2453.38 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
43. rpl8 ENSDARG00000014867 321.58 2410.28 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
44. hmga1a ENSDARG00000028335 321.00 2405.94 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
45. col1a1a ENSDARG00000012405, ENSDARG00000116113 313.52 2349.87 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
46. tpm3 ENSDARG00000005162 309.50 2319.74 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
47. rplp1 ENSDARG00000021864 307.77 2306.78 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
48. btf3 ENSDARG00000035400, ENSDARG00000116462 304.89 2285.19 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
49. ptmab ENSDARG00000101766 302.59 2267.95 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
50. zgc:112425 zgc:112425 299.72 2246.44
51. ttna ttna 291.66 2186.03
52. mylpfb ENSDARG00000002589 288.79 2164.52 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
53. hspa8 ENSDARG00000068992, ENSDARG00000114726 286.48 2147.20 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
54. rps27a ENSDARG00000032725, ENSDARG00000114059 284.18 2129.97 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
55. rpl18 ENSDARG00000029533 280.73 2104.11 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
56. rpl19 ENSDARG00000013307 269.80 2022.19 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
57. rps9 ENSDARG00000011405, ENSDARG00000113248 267.50 2004.95 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
58. rpl9 ENSDARG00000037350, ENSDARG00000112384 265.20 1987.71 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
59. rpl11 ENSDARG00000043509 260.60 1953.23 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
60. rps23 ENSDARG00000021838 257.72 1931.64 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
61. cfl1l ENSDARG00000012972 256.57 1923.02 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
62. rpl18a ENSDARG00000025073 256.57 1923.02 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
63. rpl21 ENSDARG00000010516, ENSDARG00000110263 254.27 1905.79 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
64. rpl26 ENSDARG00000102317 251.39 1884.20 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
65. rpl27 ENSDARG00000015128 249.09 1866.96 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
66. pfn1 ENSDARG00000088091 242.19 1815.24 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
67. rps15a ENSDARG00000010160 236.44 1772.15 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
68. rps5 ENSDARG00000043453 234.14 1754.91 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
69. ttnb ttnb 233.56 1750.56
70. cyt1l ENSDARG00000036832 229.53 1720.36 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
71. gapdh ENSDARG00000043457 224.93 1685.88 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
72. rps26l ENSDARG00000030408 222.05 1664.29 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
73. fabp3 ENSDARG00000023290 218.60 1638.43 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
74. col1a1b ENSDARG00000035809 218.03 1634.16 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
75. hbae3 ENSDARG00000079305 216.88 1625.54 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
76. rps20 ENSDARG00000036044 216.30 1621.20 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
77. rps2 ENSDARG00000077291 211.70 1586.72 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
78. rpl7 ENSDARG00000007320 209.40 1569.48 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
79. icn ENSDARG00000009978 207.67 1556.51 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
80. rplp2 ENSDARG00000101406 207.10 1552.24 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
81. rps14 ENSDARG00000036629 207.10 1552.24 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
82. fkbp1aa ENSDARG00000022684 204.22 1530.65 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
83. rps12 ENSDARG00000036875, ENSDARG00000115157 199.04 1491.83 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
84. eif5a ENSDARG00000017235 196.74 1474.59 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
85. rpl35 ENSDARG00000018334 190.99 1431.49 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
86. rpsa ENSDARG00000019181 189.84 1422.87 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
87. rps27.1 ENSDARG00000023298 188.69 1414.26 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
88. ATP5B 186.96 1401.29 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
89. rpl5b ENSDARG00000015862, ENSDARG00000109661 184.66 1384.05 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
90. smyhc1 ENSDARG00000099959, ENSDARG00000115916 183.51 1375.43 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
91. si:dkeyp-113d7.4 si:dkeyp-113d7.4 178.33 1336.61
92. nme2b.2 ENSDARG00000099420 177.76 1332.33 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
93. rps6 ENSDARG00000019778 177.76 1332.33 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
94. hbbe3 ENSDARG00000038147, ENSDARG00000109344 176.61 1323.71 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
95. pvalb4 ENSDARG00000024433 176.61 1323.71 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
96. rps15 ENSDARG00000070849, ENSDARG00000110979 176.03 1319.37 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
97. tmem38a ENSDARG00000024047 174.31 1306.48 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
98. rps4x ENSDARG00000014690 173.16 1297.86 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
99. mt-nd3 ENSDARG00000063914 172.01 1289.24 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
100. eef2b ENSDARG00000100371, ENSDARG00000109247 171.43 1284.89 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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