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Experiment Zebrafish_40hpf_whole_embryo1, section s56.

Sample reads: 133,400. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 27876.49 208969.77
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4017.27 30114.55 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2607.41 19545.86 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 2101.81 15755.74 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. mt-co2 ENSDARG00000063908 2028.49 15206.11 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. ckma ENSDARG00000035327, ENSDARG00000114671 1411.39 10580.16 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. tmsb4x ENSDARG00000077777 1330.43 9973.27 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
8. mylz3 ENSDARG00000017441 1182.27 8862.62 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
9. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1177.69 8828.29 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
10. mt-nd2 ENSDARG00000063899 1157.83 8679.41 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
11. mt-atp6 ENSDARG00000063911 1113.53 8347.32 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
12. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1092.15 8187.05 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
13. mt-co3 ENSDARG00000063912 1066.18 7992.38 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
14. mt-nd4 ENSDARG00000063917 1064.65 7980.91 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
15. myhz2 ENSDARG00000012944 974.53 7305.34 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
16. atp2a1 ENSDARG00000020574 939.40 7042.00 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
17. si:dkey-151g10.6 si:dkey-151g10.6 924.12 6927.46
18. pvalb2 ENSDARG00000002768, ENSDARG00000114085 899.69 6744.32 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
19. mt-cyb ENSDARG00000063924 837.06 6274.83 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
20. acta1b ENSDARG00000055618 771.38 5782.47 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
21. actb2 ENSDARG00000037870 720.97 5404.59 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
22. tnnt3a ENSDARG00000030270 681.26 5106.91 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
23. actc1b ENSDARG00000099197 662.93 4969.50 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
24. myhz1.3 ENSDARG00000067997 655.29 4912.23 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
25. mt-nd1 ENSDARG00000063895 621.68 4660.28 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
26. tnni2a.4 ENSDARG00000029069 583.50 4374.08 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
27. acta1a ENSDARG00000036371 581.97 4362.61 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
28. ppiaa ENSDARG00000009212 510.18 3824.45 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
29. eef1a1l1 ENSDARG00000020850 494.90 3709.91 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
30. ttna ttna 458.24 3435.09
31. rpl10a ENSDARG00000042905, ENSDARG00000115649 456.72 3423.70 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
32. aldoab ENSDARG00000034470 441.44 3309.15 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
33. zgc:92533 zgc:92533 441.44 3309.15
34. myl1 ENSDARG00000014196 421.58 3160.28 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
35. pvalb1 ENSDARG00000037789 409.36 3068.67 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
36. actb1 ENSDARG00000037746, ENSDARG00000113649 406.31 3045.81 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
37. myl10 ENSDARG00000062592 383.40 2874.07 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
38. rpl23 ENSDARG00000053457 369.65 2771.00 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
39. si:ch211-226o13.2 357.43 2679.39 si:ch211-226o13.2
40. zgc:66286 zgc:66286 357.43 2679.39
41. col1a1a ENSDARG00000012405, ENSDARG00000116113 354.38 2656.53 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
42. rps27a ENSDARG00000032725, ENSDARG00000114059 343.68 2576.32 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
43. hmga1a ENSDARG00000028335 332.99 2496.18 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
44. rpl11 ENSDARG00000043509 326.88 2450.38 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
45. ttnb ttnb 323.83 2427.52
46. rplp1 ENSDARG00000021864 313.13 2347.31 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
47. zgc:112425 zgc:112425 313.13 2347.31
48. hspa8 ENSDARG00000068992, ENSDARG00000114726 311.61 2335.91 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
49. rpl18a ENSDARG00000025073 307.02 2301.51 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
50. tnnt3b ENSDARG00000068457 303.97 2278.64 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
51. tpm3 ENSDARG00000005162 303.97 2278.64 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
52. btf3 ENSDARG00000035400, ENSDARG00000116462 297.86 2232.84 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
53. rpl36a ENSDARG00000058105, ENSDARG00000112656 297.86 2232.84 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
54. cyt1l ENSDARG00000036832 294.80 2209.90 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
55. rps20 ENSDARG00000036044 287.17 2152.70 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
56. mt-nd3 ENSDARG00000063914 279.53 2095.43 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
57. rpl8 ENSDARG00000014867 276.47 2072.49 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
58. rps23 ENSDARG00000021838 276.47 2072.49 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
59. hbae3 ENSDARG00000079305 274.95 2061.10 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
60. rplp2 ENSDARG00000101406 274.95 2061.10 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
61. rps26l ENSDARG00000030408 274.95 2061.10 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
62. rpl26 ENSDARG00000102317 271.89 2038.16 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
63. mt-co1 ENSDARG00000063905 264.25 1980.89 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
64. ptmab ENSDARG00000101766 259.67 1946.56 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
65. col1a1b ENSDARG00000035809 250.51 1877.89 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
66. mylpfb ENSDARG00000002589 247.45 1854.95 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
67. rpl27 ENSDARG00000015128 245.92 1843.48 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
68. col2a1a ENSDARG00000069093, ENSDARG00000111202 244.40 1832.09 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
69. tnni2b.1 ENSDARG00000035958 244.40 1832.09 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
70. rpl36 ENSDARG00000100588 242.87 1820.62 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
71. rpl21 ENSDARG00000010516, ENSDARG00000110263 241.34 1809.15 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
72. cfl1l ENSDARG00000012972 230.65 1729.02 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
73. fkbp1aa ENSDARG00000022684 230.65 1729.02 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
74. rps14 ENSDARG00000036629 224.54 1683.21 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
75. rps5 ENSDARG00000043453 224.54 1683.21 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
76. rps9 ENSDARG00000011405, ENSDARG00000113248 224.54 1683.21 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
77. rps15 ENSDARG00000070849, ENSDARG00000110979 218.43 1637.41 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
78. CR354540.2 ENSDARG00000117517 215.37 1614.47
79. rps27.1 ENSDARG00000023298 215.37 1614.47 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
80. smyhc1 ENSDARG00000099959, ENSDARG00000115916 215.37 1614.47 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
81. gapdh ENSDARG00000043457 209.26 1568.67 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
82. rpl19 ENSDARG00000013307 207.74 1557.28 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
83. rpl9 ENSDARG00000037350, ENSDARG00000112384 206.21 1545.81 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
84. eif5a ENSDARG00000017235 204.68 1534.34 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
85. fabp3 ENSDARG00000023290 204.68 1534.34 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
86. rpl18 ENSDARG00000029533 204.68 1534.34 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
87. rps15a ENSDARG00000010160 203.15 1522.87 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
88. eef2b ENSDARG00000100371, ENSDARG00000109247 200.10 1500.00 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
89. icn ENSDARG00000009978 200.10 1500.00 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
90. hbbe1.1 ENSDARG00000113599 198.57 1488.53 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
91. ATP5B 197.04 1477.07 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
92. si:dkey-150i13.2 ENSDARG00000071052 197.04 1477.07 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
93. rpl7 ENSDARG00000007320 190.93 1431.26 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
94. tpm2 ENSDARG00000104682 190.93 1431.26 tropomyosin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040625-114]
95. rps19 ENSDARG00000030602 186.35 1396.93 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
96. rps2 ENSDARG00000077291 177.19 1328.26 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
97. rpl24 ENSDARG00000099104 174.13 1305.33 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
98. rps4x ENSDARG00000014690 174.13 1305.33 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
99. rpsa ENSDARG00000019181 172.61 1293.93 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
100. faua ENSDARG00000099022 169.55 1270.99 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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