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Experiment Zebrafish_40hpf_whole_embryo1, section s55.

Sample reads: 133,406. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 12249.00 91817.16
2. tpma ENSDARG00000033683 6009.73 45048.28 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 5924.06 44406.11 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. ckmb ENSDARG00000040565 3467.24 25990.05 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2584.23 19371.11 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
6. tmsb4x ENSDARG00000077777 1902.20 14258.68 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
7. ckma ENSDARG00000035327, ENSDARG00000114671 1887.93 14151.72 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
8. mt-co2 ENSDARG00000063908 1860.47 13945.88 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1337.69 10027.18 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
10. mt-nd2 ENSDARG00000063899 1294.86 9706.13 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
11. mt-nd4 ENSDARG00000063917 1241.04 9302.70 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
12. atp2a1 ENSDARG00000020574 1201.51 9006.39 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
13. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1149.89 8619.45 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
14. acta1b ENSDARG00000055618 1044.45 7829.08 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
15. tnni2a.4 ENSDARG00000029069 1035.67 7763.27 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
16. aldoab ENSDARG00000034470 956.59 7170.49 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
17. myhz2 ENSDARG00000012944 921.45 6907.09 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
18. mt-co3 ENSDARG00000063912 885.21 6635.44 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. actc1b ENSDARG00000099197 833.59 6248.50 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
20. mt-nd1 ENSDARG00000063895 813.82 6100.31 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
21. si:dkey-151g10.6 si:dkey-151g10.6 781.97 5861.56
22. myhz1.3 ENSDARG00000067997 777.57 5828.58 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
23. ppiaa ENSDARG00000009212 699.60 5244.13 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
24. mylpfb ENSDARG00000002589 682.03 5112.42 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
25. mt-atp6 ENSDARG00000063911 677.63 5079.44 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
26. actb2 ENSDARG00000037870 663.35 4972.40 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
27. zgc:66286 zgc:66286 662.26 4964.23
28. myl10 ENSDARG00000062592 660.06 4947.74 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
29. tnnt3b ENSDARG00000068457 655.67 4914.83 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
30. mt-cyb ENSDARG00000063924 642.49 4816.03 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
31. si:ch211-226o13.2 605.15 4536.14 si:ch211-226o13.2
32. acta1a ENSDARG00000036371 555.72 4165.62 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
33. mylz3 ENSDARG00000017441 516.19 3869.30 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
34. hbae3 ENSDARG00000079305 515.09 3861.06 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
35. rps26l ENSDARG00000030408 504.11 3778.75 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
36. ttna ttna 495.32 3712.86
37. rpl36 ENSDARG00000100588 492.02 3688.13 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
38. pvalb4 ENSDARG00000024433 456.88 3424.72 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
39. hbbe3 ENSDARG00000038147, ENSDARG00000109344 439.31 3293.02 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
40. tnnt3a ENSDARG00000030270 434.91 3260.04 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
41. rps23 ENSDARG00000021838 425.03 3185.98 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
42. zgc:112425 zgc:112425 412.95 3095.43
43. pvalb1 ENSDARG00000037789 370.12 2774.38 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
44. hbbe1.1 ENSDARG00000113599 369.02 2766.13 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
45. rpl10a ENSDARG00000042905, ENSDARG00000115649 367.92 2757.89 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
46. rps27a ENSDARG00000032725, ENSDARG00000114059 363.53 2724.98 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
47. rpl9 ENSDARG00000037350, ENSDARG00000112384 347.05 2601.45 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
48. eef1a1l1 ENSDARG00000020850 344.86 2585.03 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
49. col1a1b ENSDARG00000035809 341.56 2560.30 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
50. rpl18a ENSDARG00000025073 330.58 2477.99 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
51. rpl26 ENSDARG00000102317 325.09 2436.84 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
52. fabp3 ENSDARG00000023290 322.89 2420.35 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
53. rps9 ENSDARG00000011405, ENSDARG00000113248 320.69 2403.86 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
54. cyt1l ENSDARG00000036832 318.50 2387.44 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
55. rpl23 ENSDARG00000053457 313.01 2346.29 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
56. nme2b.2 ENSDARG00000099420 299.83 2247.49 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
57. hbae1_1 296.53 2222.76 hemoglobin, alpha embryonic 1
58. ttnb ttnb 288.84 2165.11
59. hspa8 ENSDARG00000068992, ENSDARG00000114726 285.55 2140.45 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
60. cfl1l ENSDARG00000012972 282.26 2115.79 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
61. RPL29 ENSDARG00000077717 281.16 2107.54 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
62. rpl39 ENSDARG00000036316, ENSDARG00000117167 274.57 2058.15 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
63. si:dkeyp-113d7.4 si:dkeyp-113d7.4 272.37 2041.66
64. icn ENSDARG00000009978 266.88 2000.50 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
65. tmem38a ENSDARG00000024047 252.60 1893.46 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
66. rpl19 ENSDARG00000013307 250.41 1877.05 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
67. rpl27 ENSDARG00000015128 249.31 1868.80 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
68. si:dkeyp-86f7.3 si:dkeyp-86f7.3 249.31 1868.80
69. hbbe1.1_1 ENSDARG00000113599 248.21 1860.55 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
70. rpl14 ENSDARG00000103433 248.21 1860.55 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
71. gapdh ENSDARG00000043457 244.91 1835.82 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
72. ldb3b ENSDARG00000099974 237.23 1778.25 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
73. tnni2b.1 ENSDARG00000035958 222.95 1671.21 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
74. rpl31 ENSDARG00000053365 221.85 1662.96 ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-060331-121]
75. cox4i1 ENSDARG00000032970 219.65 1646.47 cytochrome c oxidase subunit 4I1 [Source:ZFIN;Acc:ZDB-GENE-030131-5175]
76. ATP5B 218.56 1638.30 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
77. actb1 ENSDARG00000037746, ENSDARG00000113649 217.46 1630.06 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
78. rpl21 ENSDARG00000010516, ENSDARG00000110263 213.06 1597.07 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
79. rps20 ENSDARG00000036044 213.06 1597.07 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
80. smyhc1 ENSDARG00000099959, ENSDARG00000115916 213.06 1597.07 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
81. eef1g ENSDARG00000056119 211.97 1588.90 eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
82. rpl36a ENSDARG00000058105, ENSDARG00000112656 210.87 1580.66 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
83. rpl23a ENSDARG00000006316 204.28 1531.26 ribosomal protein L23a [Source:ZFIN;Acc:ZDB-GENE-030131-7479]
84. rpl38 ENSDARG00000006413 202.08 1514.77 ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-030131-8752]
85. rps18 ENSDARG00000100392 195.49 1465.37 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
86. col1a1a ENSDARG00000012405, ENSDARG00000116113 194.39 1457.13 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
87. gch2 ENSDARG00000099101 194.39 1457.13 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
88. rpl30 ENSDARG00000035871, ENSDARG00000109253 188.90 1415.97 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
89. rpl11 ENSDARG00000043509 176.82 1325.42 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
90. faua ENSDARG00000099022 175.72 1317.18 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
91. zgc:92533 zgc:92533 175.72 1317.18
92. aldoaa ENSDARG00000011665 173.53 1300.76 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
93. zgc:86709 ENSDARG00000110511, ENSDARG00000111417 172.43 1292.52 zgc:86709 [Source:ZFIN;Acc:ZDB-GENE-040625-35]
94. casq2 ENSDARG00000008982 171.33 1284.27 calsequestrin 2 [Source:ZFIN;Acc:ZDB-GENE-010724-12]
95. rps28 ENSDARG00000035860 168.04 1259.61 ribosomal protein S28 [Source:ZFIN;Acc:ZDB-GENE-030131-2022]
96. rps15 ENSDARG00000070849, ENSDARG00000110979 165.84 1243.12 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
97. atp5a1 164.74 1234.87 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
98. tpm3 ENSDARG00000005162 164.74 1234.87 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
99. atp5g1 163.64 1226.63 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
100. eif5a ENSDARG00000017235 163.64 1226.63 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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