Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Zebrafish_40hpf_whole_embryo1, section s54.

Sample reads: 133,410. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 20431.18 153145.62
2. tpma ENSDARG00000033683 3546.96 26586.88 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 3286.44 24634.11 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. ckmb ENSDARG00000040565 2619.46 19634.64 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. ckma ENSDARG00000035327, ENSDARG00000114671 2181.67 16353.10 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
6. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1927.80 14450.17 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
7. actc1b ENSDARG00000099197 1631.19 12226.88 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
8. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1464.68 10978.77 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
9. mt-co2 ENSDARG00000063908 1455.50 10909.96 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
10. mylz3 ENSDARG00000017441 1359.59 10191.05 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
11. myhz1.3 ENSDARG00000067997 1324.77 9930.05 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
12. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1299.76 9742.59 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
13. acta1b ENSDARG00000055618 1201.31 9004.64 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
14. atp2a1 ENSDARG00000020574 1186.43 8893.10 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
15. mt-atp6 ENSDARG00000063911 1166.81 8746.04 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
16. mt-co3 ENSDARG00000063912 1014.86 7607.07 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
17. mt-nd4 ENSDARG00000063917 926.23 6942.73 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
18. mt-nd2 ENSDARG00000063899 911.35 6831.19 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
19. myhz2 ENSDARG00000012944 837.28 6275.98 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
20. tnni2a.4 ENSDARG00000029069 833.80 6249.90 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
21. tmsb4x ENSDARG00000077777 817.65 6128.84 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
22. actb2 ENSDARG00000037870 741.68 5559.40 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
23. si:ch211-226o13.2 725.22 5436.02 si:ch211-226o13.2
24. tnnt3a ENSDARG00000030270 724.59 5431.30 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
25. myl1 ENSDARG00000014196 699.58 5243.83 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
26. pvalb1 ENSDARG00000037789 690.40 5175.02 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
27. eef1a1l1 ENSDARG00000020850 681.85 5110.93 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
28. mt-cyb ENSDARG00000063924 660.64 4951.95 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
29. si:dkey-151g10.6 si:dkey-151g10.6 629.30 4717.03
30. acta1a ENSDARG00000036371 606.83 4548.60 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
31. actb1 ENSDARG00000037746, ENSDARG00000113649 563.46 4223.52 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
32. tnnt3b ENSDARG00000068457 508.07 3808.33 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
33. mylpfb ENSDARG00000002589 484.64 3632.71 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
34. rpl23 ENSDARG00000053457 459.95 3447.64 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
35. mt-nd1 ENSDARG00000063895 450.14 3374.11 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
36. aldoab ENSDARG00000034470 417.21 3127.27 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
37. ppiaa ENSDARG00000009212 409.93 3072.70 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
38. ttna ttna 408.67 3063.26
39. mt-co1 ENSDARG00000063905 395.69 2965.97 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
40. rpl10a ENSDARG00000042905, ENSDARG00000115649 394.11 2954.12 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
41. zgc:66286 zgc:66286 381.13 2856.83
42. myl10 ENSDARG00000062592 347.57 2605.27 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
43. col1a1a ENSDARG00000012405, ENSDARG00000116113 333.33 2498.54 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
44. ttnb ttnb 323.52 2425.00
45. ATP5B 297.87 2232.74 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
46. tpm3 ENSDARG00000005162 295.98 2218.57 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
47. hbae3 ENSDARG00000079305 294.71 2209.05 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
48. zgc:92533 zgc:92533 291.86 2187.69
49. gapdh ENSDARG00000043457 273.82 2052.47 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
50. rpl36a ENSDARG00000058105, ENSDARG00000112656 272.23 2040.55 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
51. nme2b.2 ENSDARG00000099420 271.92 2038.23 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
52. zgc:112425 zgc:112425 262.10 1964.62
53. btf3 ENSDARG00000035400, ENSDARG00000116462 260.21 1950.45 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
54. rpl9 ENSDARG00000037350, ENSDARG00000112384 258.94 1940.93 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
55. rplp1 ENSDARG00000021864 253.24 1898.21 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
56. hmga1a ENSDARG00000028335 248.49 1862.60 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
57. lyz ENSDARG00000057789, ENSDARG00000109290, ENSDARG00000114098 248.49 1862.60 lysozyme [Source:ZFIN;Acc:ZDB-GENE-020515-2]
58. hspa8 ENSDARG00000068992, ENSDARG00000114726 246.28 1846.04 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
59. rps23 ENSDARG00000021838 239.00 1791.47 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
60. col1a1b ENSDARG00000035809 236.46 1772.43 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
61. rpl26 ENSDARG00000102317 228.55 1713.14 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
62. rpl8 ENSDARG00000014867 224.12 1679.93 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
63. cfl1l ENSDARG00000012972 222.54 1668.09 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
64. rps2 ENSDARG00000077291 220.95 1656.17 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
65. rpl18a ENSDARG00000025073 218.74 1639.61 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
66. rps9 ENSDARG00000011405, ENSDARG00000113248 218.10 1634.81 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
67. gch2 ENSDARG00000099101 217.47 1630.09 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
68. eif5a ENSDARG00000017235 213.04 1596.88 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
69. rpl21 ENSDARG00000010516, ENSDARG00000110263 210.82 1580.24 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
70. fkbp1aa ENSDARG00000022684 206.08 1544.71 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
71. rpl19 ENSDARG00000013307 205.44 1539.91 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
72. rpl27 ENSDARG00000015128 205.13 1537.59 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
73. rplp2 ENSDARG00000101406 201.96 1513.83 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
74. rpl11 ENSDARG00000043509 199.43 1494.86 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
75. rps26l ENSDARG00000030408 198.79 1490.07 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
76. rps20 ENSDARG00000036044 195.31 1463.98 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
77. rps27a ENSDARG00000032725, ENSDARG00000114059 195.00 1461.66 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
78. rpl18 ENSDARG00000029533 193.41 1449.74 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
79. hbbe1.1 ENSDARG00000113599 193.10 1447.42 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
80. hbbe3 ENSDARG00000038147, ENSDARG00000109344 192.46 1442.62 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
81. smyhc1 ENSDARG00000099959, ENSDARG00000115916 187.08 1402.29 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
82. si:dkeyp-113d7.4 si:dkeyp-113d7.4 186.45 1397.57
83. pfn1 ENSDARG00000088091 186.13 1395.17 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
84. cyt1l ENSDARG00000036832 185.18 1388.05 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
85. rpl7 ENSDARG00000007320 183.92 1378.61 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
86. tmem38a ENSDARG00000024047 183.92 1378.61 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
87. rplp0 ENSDARG00000051783 182.65 1369.09 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
88. atp5g3b 177.90 1333.48 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
89. eef2b ENSDARG00000100371, ENSDARG00000109247 177.27 1328.76 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
90. rps15a ENSDARG00000010160 177.27 1328.76 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
91. ptmab ENSDARG00000101766 174.42 1307.40 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
92. tnni2b.1 ENSDARG00000035958 171.89 1288.43 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
93. faua ENSDARG00000099022 170.94 1281.31 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
94. rpl6 ENSDARG00000058451 170.62 1278.91 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
95. fabp3 ENSDARG00000023290 169.99 1274.19 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
96. rps15 ENSDARG00000070849, ENSDARG00000110979 169.99 1274.19 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
97. rps27.1 ENSDARG00000023298 169.99 1274.19 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
98. rps12 ENSDARG00000036875, ENSDARG00000115157 169.67 1271.79 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
99. rps4x ENSDARG00000014690 167.77 1257.55 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
100. ldb3b ENSDARG00000099974 167.14 1252.83 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA